Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq32 113 4e-20 seq76 89.7 5e-13 seq6 84.2 2e-11 seq13 82.4 7e-11 >seq32 Length=411647 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | | |||||| || |||| |||||||||||||| |||||||| ||| | Sbjct 326288 CCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAC 326229 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| | ||| || || ||| |||| |||||||| ||||| || || Sbjct 326228 AAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 326169 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | ||||| | || ||| ||| Sbjct 326168 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACT 326109 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || ||||| | || || ||||| || ||||| Sbjct 326108 TCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || |||| |||||||||||||| |||||||| ||| | || || ||||| Sbjct 326043 AACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTC 325984 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | |||||| |||||| |||| | | ||| ||||| || || || ||||| ||||| Sbjct 325983 CAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTG 325924 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | || | ||||| | | ||| ||||||| ||| | || || Sbjct 325923 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 325864 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || || || || ||||| Sbjct 325863 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 >seq76 Length=128862 Score = 89.7 bits (98), Expect = 5e-13 Identities = 257/390 (66%), Gaps = 4/390 (1%) Strand=Plus/Plus Query 151272 ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATT 151331 |||| || | |||||| || || | |||||| || ||| | || ||||| | | |||| Sbjct 13290 ATTTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATT 13349 Query 151332 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTT 151391 | || ||||| | || | ||| |||||| || ||| ||| ||||||||||| Sbjct 13350 GAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTT 13409 Query 151392 TGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTA 151451 | | |||||| || ||||| | || ||||| || | || ||||| |||| |||| | Sbjct 13410 TTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAA 13469 Query 151452 TAATGTTTCGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCAT 151511 ||| ||| | | | || | ||| | ||||| ||| | || |||| Sbjct 13470 CAATCTTTTTGAAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTCAT 13529 Query 151512 AATGTTTGTACCAGT-ATTCAAAGTCATCACCATACGTATC-GTTGAGCTTAGGACACTC 151569 | ||| || ||| || || || | ||| | ||| | | ||| | ||||| || Sbjct 13530 ATCGTTCATA-AAGTGCCTCGAATTCCTGACCCCAACAATCAGCTAAGCCT-GGACATTC 13587 Query 151570 GTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGG 151629 || || ||||| || ||||| ||||| | |||| | | ||||||||| | ||| || Sbjct 13588 GTGTGGGCACATCAAAGACCACATACCATCGGTTTCAGCTCTTTTCATAAACAAATCAGG 13647 Query 151630 AACCCATAATGCGTTCATCAAATCACGCGC 151659 ||||| || ||| | ||| |||||||| Sbjct 13648 GACCCACAACCCGTAAAACAAGTCACGCGC 13677 >seq6 Length=947499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || || | ||| || ||||||| || || || ||||| |||||||| || || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || ||| ||||| | ||| || || ||| |||| || | ||| || || ||||| Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 137305 ATGCCTTCTTTGTC 137318 || ||||||||||| Sbjct 442304 ATTCCTTCTTTGTC 442317 >seq13 Length=696343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151272 ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATT 151331 |||| || | |||||| || || | |||||| || ||| | || ||||| | | |||| Sbjct 650269 ATTTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATT 650328 Query 151332 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTT 151391 | || ||||| | || | ||| |||||| || ||| ||| ||||||||||| Sbjct 650329 GAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTT 650388 Query 151392 TGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTA 151451 | | |||||| || ||||| | || ||||| || | || ||||| |||| |||| | Sbjct 650389 TTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAA 650448 Query 151452 TAATGTTT 151459 ||| ||| Sbjct 650449 CAATCTTT 650456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541123697200