Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 >seq6 Length=947499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| || || || ||||| || | | || | ||||| | Sbjct 442661 AAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCCAAT 442720 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || | || ||||| |||||||| ||||||||||| |||| Sbjct 442721 TGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGGATC 442780 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | || | ||||||| | || || || | ||||| |||||| ||| Sbjct 442781 TTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCG 442840 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| || ||||| Sbjct 442841 GTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | ||||| || || | || || | |||||||| |||||||| |||||||| Sbjct 442027 GTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTT 442086 Query 133565 GTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| | ||||| | |||| ||||| | || ||||| || | || | Sbjct 442087 GTC-TTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAA 442145 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| || ||||| ||||| Sbjct 442146 TTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417953860040