Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq76 179 9e-40 seq13 176 1e-38 seq30 149 1e-30 seq108 111 4e-19 seq46 102 2e-16 >seq76 Length=128862 Score = 179 bits (198), Expect = 9e-40 Identities = 528/804 (66%), Gaps = 21/804 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| | |||||| | || || || ||||| || ||||||||| | || Sbjct 14217 TATTTTGGATACAAAACATTAGAGCGCGCATATTTGCTCAAAATCAATGGCGTAGTTGTT 14158 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || | || | | |||||||| |||||||||| | | || ||| || Sbjct 14157 GAAAGACCAGGTTATTTGATAATGCGTGTTGCAGTTGGTATTCACAAAGAAGACATTGAA 14098 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTC--ATGCTACTCCTA 110481 |||| ||||||| || || || | || || || | | | | |||||||||| | Sbjct 14097 GCTGCTATTGAAACATACAAT-TAC-ATGTCTGAAAAATGGTTTACGCATGCTACTCCAA 14040 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTA 110541 | || |||||||||||||| | ||||| |||||| ||| | | || Sbjct 14039 CTCTTTTTAACGCAGGAACCCCTACTCCTCAATTATGTTCTTGTTTTTTGTTGACTATGT 13980 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 || ||||| || |||| |||| ||| || | || ||| | ||||| ||| Sbjct 13979 CTGAGGATTCAATCAAAGGAATTTTTGACACTTTATCTCAATGTGCCTTAATTTCGAAAT 13920 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA---GCAAATATCG 110658 | |||||||| || | ||||||| |||||| | |||||| || | | | Sbjct 13919 CGGCAGGAGGAATAGGATTGAACGTTCACTGTATTCGAGCTAAAGGAACTGCCATAAATG 13860 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 ||| ||| || | ||| | ||| | ||||||||| | ||| || ||| |||| | Sbjct 13859 GAAC---GAATGGCGTTTCTAATGGTTTAGTTCCAATGCTCCAAGTATTTAACAACACAG 13803 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 ||| |||||| || ||||| ||||| | || || | ||||| || || || |||| Sbjct 13802 CAAGATATGTCAACCAAGGAGGTAATAAAAGACCAGGTGCTTTTGCCATTTACCTTGAAC 13743 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA-AGAA 110834 | |||||| | |||||||||||||| || ||| | || ||| | ||| || || | Sbjct 13742 CCTGGCATGCTGATATATTTGAATTTTTGGAATTAAAGAAGAATGATGGAACAGATAGCA 13683 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | | || ||||| || ||||| | ||||| | | ||||| || |||||| | | | Sbjct 13682 -ATCGTGCGCGTGACTTGTTTTACGGGTTGTGGGTCCCTGATTTGTTTATGAAAAGAGCT 13624 Query 110895 CAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTA 110954 || |||| ||||||||| | ||||| || || | ||| || || ||||| Sbjct 13623 GAAACCGATGGTATGTGGTCTTTGATGTGCCCACACGAATGTCCAGGCTTAGCTGATTGT 13564 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 | || | || || || | ||||| ||| ||||||||| || |||| ||||| Sbjct 13563 TGGGGTCAGGAATTCGAGGCACTTTATGAACGATATGAAAATGAGGGCAGATTTCGAGTT 13504 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGA 111071 ||| || || |||| || |||||| || ||||| ||| ||||||| ||| Sbjct 13503 CAAGTTAAGGCAAGAGAAGTT---TTCAAAAAGATTGTTGAAAATCAAATTGAAACAGGA 13447 Query 111072 ACTCCTTATATTTTGTATAAAGAT 111095 ||||||| ||||||| ||| ||| Sbjct 13446 GCTCCTTACATTTTGTTTAAGGAT 13423 >seq13 Length=696343 Score = 176 bits (194), Expect = 1e-38 Identities = 484/727 (67%), Gaps = 35/727 (5%) Strand=Plus/Minus Query 110388 CGTGTTGCGATTGGTATTCA--TGGACATGATATTAAAGCTGTTATTGAATGTTATGATG 110445 |||||||| ||||| ||||| || || ||||| | |||| || ||| |||||| Sbjct 651112 CGTGTTGCTATTGGAATTCACATGAAC--GATATAGATGCTGCAATCGAAACATATGATC 651055 Query 110446 TATTAAGTAAAAAGAAAGCTATTC--ATGCTACTCCTACCCTATTTAACGCAGGAACTAA 110503 | || || || || | | | | | ||||| ||||| || ||||||||||||||| Sbjct 651054 T--TATGTCTCAAAAATGGTTTACCCACGCTACACCTACTCTGTTTAACGCAGGAACTTT 650997 Query 110504 TGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC-GATGATTCTATTGAAGGTA 110562 |||||| ||||||| |||||| | | | | | || || || || |||| | Sbjct 650996 AACTCCTCAATTGTCTTCTTG-TTTCTTGTTGACAATGTCTGAAGACTCAATCAAAGGAA 650938 Query 110563 TTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTC 110622 ||| || || | || ||| | ||||| ||| | |||||||| || | Sbjct 650937 TTTTCGACACTTTATCTCAATGTGCCTTAATTTCGAAATCGGCAGGAGGAATAGGATTGA 650878 Query 110623 ACGTTCATGATATTCGCTCAAAAGGA---GCAAATATCGCAACAGCGAAGGGTGCTTCAA 110679 ||||||| |||||| | |||||| || | | | ||| ||| || | ||| | Sbjct 650877 ACGTTCACTGTATTCGAGCTAAAGGAACTGCCATAAATGGAAC---GAATGGCGTTTCTA 650821 Query 110680 CTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTG 110739 ||| | ||||||||| | ||| || ||| |||| |||| |||||| | ||||| | Sbjct 650820 ATGGTTTAGTTCCAATGCTCCAAGTATTTAACAACACAGCAAGATATGTCGACCAAGGAG 650761 Query 110740 GTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTG 110796 |||| | || || | ||||| || || || ||||| |||||| | |||||||||| Sbjct 650760 GTAATAAAAGACCAGGTGCTTTTGCCATTTACCTTGAACCCTGGCATGCTGATATATTTG 650701 Query 110797 AATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGA-ACA--AA--GAGCACGTGATTT 110851 |||| || ||| |||||| || || | ||| | ||| || | |||||||| || Sbjct 650700 AATTTTTGGAA----TTAAAAAAGAATGA-TGGAACAGACAGCAATCGTGCACGTGACTT 650646 Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911 ||||| | ||||| | | ||||| || |||||| | | || |||| ||||| Sbjct 650645 GTTTTACGGGTTGTGGGTCCCTGATTTGTTTATGAAAAGAACTGAAACCGATGGTATGTG 650586 Query 110912 GTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971 |||| | ||||| || || | ||| || || ||||| | || |||| || || Sbjct 650585 GTCTTTGATGTGCCCACACGAATGTCCAGGCTTAGCTGATTGTTGGGGTCAAGAATTCGA 650526 Query 110972 AGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGA 111031 | ||||| ||| ||||||||| || |||| ||||| ||| || || ||| Sbjct 650525 GGCACTTTATGAACGATATGAAAATGAGGGCAGATTTCGAGTTCAAGTTAAGGCAAGAGA 650466 Query 111032 ACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTA 111088 | || |||||| || ||||| ||| ||||||| ||| ||||||| ||||||| Sbjct 650465 AGTT---TTCAAAAAGATTGTTGAAAATCAAATTGAAACAGGAGCTCCTTACATTTTGTT 650409 Query 111089 TAAAGAT 111095 ||| ||| Sbjct 650408 TAAGGAT 650402 >seq30 Length=447140 Score = 149 bits (164), Expect = 1e-30 Identities = 326/486 (67%), Gaps = 7/486 (1%) Strand=Plus/Minus Query 110675 TTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA 110734 ||||| ||||||||| || ||||| |||||||| | || || || ||||| |||| Sbjct 98727 TTCAAATGGACTTGTCCCTATGTTGCAGGTCTTCAATAATACCGCTAAGTATGTTGATCA 98668 Query 110735 AGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATAT 110791 ||| || || | || ||| | ||||| || ||||| |||||||||||| | ||||| Sbjct 98667 AGGAGGCAACAAAAGACCTGGTGCTTTTGCCATTTATCTAGAACCTTGGCATGCTGATAT 98608 Query 110792 ATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTT 110851 || || |||||||| | || |||||| | ||| |||| | | ||||||||||| Sbjct 98607 CTTCGATTTCTTAGAGTTACGAAAAAATGATGGAACTGAATCTAATCGTGCACGTGATTT 98548 Query 110852 ATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTG 110911 ||||||| | |||||| | || | || |||||| | | || | | |||||| Sbjct 98547 GTTTTATGGGCTATGGATTCCTGACCTTTTTATGAAAAGAGCCAAATCCGACGACATGTG 98488 Query 110912 GTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGA 110971 ||| |||||||||||| || | ||||| | | ||| | ||| |||| || || Sbjct 98487 GTCCCTTATGTGTCCTAATGAATGCCCTGGCTTGGCCGATTGCTGGGGACAAGAATTCGA 98428 Query 110972 AGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGA 111031 || | | |||| ||||||||| ||| || | ||| ||| | ||| ||||| Sbjct 98427 AGCCTTATACGTTAAATATGAACTCGAAAAGAAATATCGAGTTCAAGT--CAGAGCAAGA 98370 Query 111032 --ACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTAT 111089 |||| | || || ||| ||| ||||||| |||| || || ||| | || Sbjct 98369 GCTCTTTTGAAGAAGATAGCCGAAAGTCAAATTGAAACAGGAAACCCCTACATTCTTTAC 98310 Query 111090 AAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 |||||| | || | ||| ||| ||| ||| | ||||| || || | |||| Sbjct 98309 AAAGATGCTTGCAACAGAAAAAGTAACCAACAAAATCTTGGAACTATCAAATGCTCTAAT 98250 Query 111150 TTGTGC 111155 |||||| Sbjct 98249 TTGTGC 98244 >seq108 Length=67188 Score = 111 bits (122), Expect = 4e-19 Identities = 314/479 (66%), Gaps = 5/479 (1%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 |||||||||||||||| | ||| ||||| || || || ||||| | ||||| || Sbjct 5803 TGGACTTGTTCCAATGCTCCAAGTATTCAATAGTACCGCCAAGTATGTCGACCAAGGAGG 5862 Query 110741 ---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 || ||| ||| | |||||||| ||||| ||||| |||||| | ||||| | || Sbjct 5863 AAACAAAAGACCTGGTGCTTTTGCTATTTATCTAGAACCATGGCATGCTGATATCATGGA 5922 Query 110798 ATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTA 110857 || | || ||| |||||| | || || | | | ||||| || || ||||| Sbjct 5923 TTTTCTGGAGCTTAAGAAAAATGATGGGACAGATGCCAATCGGGCACGAGACTTGTTTTA 5982 Query 110858 TGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCT 110917 | |||||||| | ||| | ||||||||| | | | ||| || ||||||||| | Sbjct 5983 CGGGCTGTGGATTCCGGATCTTTTCATGAAAAGAGCCAAGGAAGGTGAAATGTGGTCTTT 6042 Query 110918 TATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCT 110977 ||||||||| || | ||||| || ||||| | ||| | || || ||| || | Sbjct 6043 GATGTGTCCTAATGAATGCCCTGGCTTAGCTGATTGTTGGGGAGAGGACTTCGAA-ACTT 6101 Query 110978 T-TACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTT 111036 | || | || ||||||| ||| |||| |||| ||| | ||| ||| ||| Sbjct 6102 TGTATGCCAAGTATGAAACTGAAAAGAAGTATCGCTCCCAAGTCAAGGCTAGAGATATTT 6161 Query 111037 GGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATC 111096 | || ||| |||||| ||| | || ||||| ||||| || | | |||||| Sbjct 6162 TGAAGAAGATCATTGAATGTCAAATGGAGCTTGGAATGCCTTACATCCTATTCAAAGATG 6221 Query 111097 ATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | || | ||| || ||| |||| | ||||| || |||| ||||||||| Sbjct 6222 CTTGCAACAGAAAAAGCAACCAACAGAATCTTGGAACCATAAAGTGCTCCAATTTGTGC 6280 >seq46 Length=308105 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | || || || || || ||||| || || |||||||| | || ||| Sbjct 210727 GTCCTCTTCAATCGCCAGCCCTCCCTTCACAAAATTTCAATCATGGCTCACAGAGCAAAA 210786 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 ||| | | ||| || || ||||| |||| |||| || || ||||| ||||| ||| Sbjct 210787 GTAGTGCCAGGAAGAACCTTCCGATTCAATGAGTGTGCCTGCACACCTTACAATGCTGAT 210846 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || |||||||||||||||||| | ||| | || ||| Sbjct 210847 TTCGATGGAGATGAAATGAATCTCCATCTGCCACAA 210882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186805637955631