Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq32 93.3 3e-14 seq6 84.2 1e-11 >seq32 Length=411647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || |||||||| |||||||| ||||| | || | | | || ||| Sbjct 326042 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCC 325983 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| ||||| || || | || |||||| | || | ||||| ||||| Sbjct 325982 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 325923 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | || | ||| | |||||| | ||| || |||| || || ||||| Sbjct 325922 ATCTT-GGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 325864 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || || || ||||| |||||||| Sbjct 325863 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || ||||| || || || |||||||| |||||||| ||||| | || || | || Sbjct 326273 AAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCT 326214 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||||||| ||||||||||| || | ||| || |||||| | || | ||||| ||||| Sbjct 326213 TCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCT 326154 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || || | ||| | |||||| | ||| || |||| || || || Sbjct 326153 TGGATCTT-GGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGT 326095 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | || || || || |||||||| Sbjct 326094 TTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 >seq6 Length=947499 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | || || ||||| |||||||| || || || || ||| |||| ||| Sbjct 441974 ACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTCCTCC 442033 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||||||||| || | | ||||| ||| | || | ||||| ||||| | Sbjct 442034 AATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGA 442093 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | ||||| | |||||| || | || || || || Sbjct 442094 ATTTT-GGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCTT 442152 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| ||||| || ||||| Sbjct 442153 TCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702113136320