Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq32 145 2e-29 seq6 136 9e-27 >seq32 Length=411647 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || ||| | ||||| ||| |||||||| | || Sbjct 326077 AAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCTGACACCATTGACAAC 326136 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||||||| || || ||| | |||||||| Sbjct 326137 GTCAAAGCCAA-GATCCAAGACAAGGAAGGAATTCCCCCAGATCAACAACGTCTTATCTT 326195 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||||| ||||||||||| | |||||| |||| |||||| |||| ||||| || Sbjct 326196 TGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAACATCCAAAAAGAATC 326255 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| | |||||||||||||| Sbjct 326256 TACCCTTCACTTGGTTTTGAGACTTCG 326282 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | ||||||||||| || ||| | ||||| ||| ||||||| Sbjct 325837 CAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGAC 325896 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||||||| || || ||| Sbjct 325897 ACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAACAA 325956 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || ||||| || |||||||||||||| || || |||| |||||| || Sbjct 325957 AGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAACATC 326016 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||| |||||| | ||| | |||||| || Sbjct 326017 CAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGA 326055 Score = 113 bits (124), Expect = 1e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||||||| | |||||| ||||| ||||| |||| || ||||| | |||||| Sbjct 326282 CGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTA 326223 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||| ||||||||||| |||||||| ||||||||| Sbjct 326222 CGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGA 326178 >seq6 Length=947499 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || |||||||| || || ||||| || || |||||| Sbjct 442407 CAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCTGAC 442348 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||||||||| || ||| ||| Sbjct 442347 ACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAACAA 442288 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||| ||||||||||| || |||||||| || ||||| || |||||| || Sbjct 442287 AGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAACATC 442228 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||||| |||||||| | || |||||| Sbjct 442227 CAAAAGGAGTCAACTCTTCATTTGGTCTTGAGA 442195 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| ||||| || || ||||||||||||||| || ||||| | Sbjct 442174 TTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTCGGACACTAT 442115 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| || |||||||| || |||||||| || ||| |||||||| Sbjct 442114 TGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAGCAAAGACT 442055 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| ||||||||||| ||||| || ||| | ||| | | || |||||| |||| || Sbjct 442054 TATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAACATCCAAAA 441995 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | || | ||| |||||||||| Sbjct 441994 GGAATCAACCTTGCATTTGGTTCTGAGACTTCG 441962 Score = 129 bits (142), Expect = 1e-24 Identities = 144/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || |||||||| ||||| ||||||| ||| ||| ||||| |||| Sbjct 442624 CAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCGACACCATCGACAA 442565 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| || |||||||| || ||| ||||||||||||| Sbjct 442564 CGTCAAAGCTAA-GATCCAAGACAAGGAAGGAATCCCTCCAGACCAACAAAGACTTATCT 442506 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | ||||||||||| ||||| ||||| || ||||| || |||||| |||| || |||| Sbjct 442505 TTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACATCCAAAAGGAGT 442446 Query 206363 CTACTCTTCA 206372 | || ||||| Sbjct 442445 CAACCCTTCA 442436 Score = 123 bits (136), Expect = 6e-23 Identities = 137/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || |||||||| ||||| ||||||| ||| ||| ||||| |||| || ||||| Sbjct 442842 ACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCGACACCATCGACAACGTCAAAGCT 442783 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| ||||| || |||||||| || ||| |||||||||||||| |||||||| Sbjct 442782 AA-GATCCAAGACAAGGAAGGAATCCCTCCAGACCAACAAAGACTTATCTTTGCCGGAAA 442724 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||| ||||| || ||||| || |||||| |||| || ||||| || ||||| Sbjct 442723 GCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACATCCAAAAGGAGTCAACCCTTCA 442664 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || || ||||| || || || ||||| |||| Sbjct 443079 AAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCCGACACCATCGATAAT 443020 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| || ||| |||||||||||||| Sbjct 443019 GTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAAAGACTTATCTTT 442960 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| || |||||||| | || | |||| ||||| |||||||||| || Sbjct 442959 GCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAATATCCAGAAAGAATCA 442900 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| | ||| | ||||| Sbjct 442899 ACTCTCCACTTGGTTCTTAGACT 442877 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| || | |||||||| ||||| || |||| || |||||| ||||| || || Sbjct 442195 TCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCC 442254 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||| | ||||||||||| |||||||| | |||||| Sbjct 442255 ATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTG 442293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181813668080791