Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq76 118 1e-21 seq13 107 2e-18 seq32 105 6e-18 seq6 89.7 5e-13 >seq76 Length=128862 Score = 118 bits (130), Expect = 1e-21 Identities = 1090/1746 (62%), Gaps = 93/1746 (5%) Strand=Plus/Plus Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTT 146752 |||||| ||||| || || || || ||||| | | || | ||||| || |||| Sbjct 12529 TTGATCGATGAATGCTCCACGATCAGCTGCCATATTTAAGATATCCTTTTGACTG-ATTT 12587 Query 146753 CCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAG 146812 |||| | |||||||| || |||||| || |||||| | |||| |||||||||| Sbjct 12588 CCCAGACTGTTTTGTAAAGTTCCTTAATTTCATTTGGAATTTCGGCAATCTTTTGAATAG 12647 Query 146813 AGCCCTTGTGC-GCAAAAATAG-TGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAAT 146870 | ||| ||| || | || || || || || | || | | || || || | Sbjct 12648 A-CCCACCTGCTGCTATCATCTCTGATTT-TACTTTGTCAGTCCATAAATTAAGATTGAC 12705 Query 146871 GAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC-TGA 146929 ||||||| || ||||| |||||| | |||||| ||||| | ||||| | ||| Sbjct 12706 AAGGTCATTAAGTAAATGTGAATTGACAATTTGAAAGTCGCCAGAGGTTACACGACGTGA 12765 Query 146930 GATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGG 146989 ||||| ||| || | ||||||| | ||||| || || | ||||| || || | Sbjct 12766 -ATACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTG 12824 Query 146990 TTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGT---ACGCACGGATGT 147046 || || ||||| || | | ||| ||||||| | || | | ||| || Sbjct 12825 AAGCTGTTGGCATAGGTGCAAGGAGCAAAGAATTTCTAACCCCATGTAATGCA---ATTC 12881 Query 147047 TGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACT 147106 | ||||| | ||| ||||| | || || || || ||||||||||| || | Sbjct 12882 TTTCCTTAAGCCGACCCCAATCCCAAAGATCTGATGGTGTAACATTCCACATGTCATATT 12941 Query 147107 GGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG 147166 | || | |||| | | || |||||| | || | ||| |||||||| | | Sbjct 12942 GCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCAG 13001 Query 147167 CCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTA 147226 |||||||||| ||| || | || |||| || || ||||| |||| |||||||| Sbjct 13002 CCAATTCACAAGATGCTTCCAACGAACCATGATAGATTGTTTCAAATATTTTTTTGTTTA 13061 Query 147227 GGACGGTCGCTTCTTCGCTCTCGTAAG--GCATACGCAGA-------AGCACAAAGGCAT 147277 | ||| || ||| ||| ||| | | | | | || || || | Sbjct 13062 AATC--------CTTTGCA-TCGGAAGAAGCAAATGGATATTTCATCAACATGAAAGCGT 13112 Query 147278 CGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGC 147337 | || || || |||| ||| | || ||||||| || || ||| || ||| || Sbjct 13113 CCGCTAATCCTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTT--TGAATTTCTTGC 13170 Query 147338 TCGCTATGGGA-----TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAAC 147392 | | ||||| || | |||| |||||||| || || | ||| | |||||| Sbjct 13171 TTG---TGGGACCGGGTAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAAC 13227 Query 147393 TTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC------CGTCTTCGACACGTAC 147446 ||| | || | | ||||| | |||||| | ||| || | || || || Sbjct 13228 TTTGGCTACTTCATGAAGTTTTGCAAAATCAAATTTCCTTGTATCGCCGTCAACTATAAC 13287 Query 147447 GCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG-- 147504 | ||| ||| | ||| || || |||| ||| || || || |||| |||| || | || Sbjct 13288 GAATTTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGG-GT-GATGAG 13345 Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 || || || ||||| | ||| |||||| |||||| || ||| | |||||| |||||| Sbjct 13346 TATTGAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTG 13405 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 147624 ||||| | ||||| || || || || | ||||| || | || || || | ||| || Sbjct 13406 CTTTTTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTT 13465 Query 147625 TCAACGAT-------AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCC 147677 ||||| || ||| || | | ||| || | || ||| | | ||| Sbjct 13466 TCAACAATCTTTTTGAAAACTTCTCTTG-CCTTAACTTGAAC------TCGAAATCTGCC 13518 Query 147678 CTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCC 147737 ||| ||||| || || || || | ||| || || | || | ||||| || | ||| Sbjct 13519 CTCATTTTCATATCGTTCATAAAGTGCCTCGAATTCCTGACCCCAACAATCAGCTAAGCC 13578 Query 147738 GGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAA 147797 ||||| | || || ||||||| |||||||| | || | | | | | | |||||| Sbjct 13579 TGGACATTCGTGTGGGCACATCAAAGACCACATACCATCGGTTTCAGCTCTTTTCATAAA 13638 Query 147798 CAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC---TTTGCAATCCTCGGCGCC 147854 || ||| || ||||||| | |||| | | || ||||| |||| ||| | Sbjct 13639 CAAATCAGGGACCCACAACCCGTAAAACAAGTCACGCGCACGATTGCTATC----TGTTC 13694 Query 147855 CATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAG 147912 ||| | | | | |||| || | | | | || || || ||||||||||||| ||| Sbjct 13695 CATCATTCTTCTTTAATTCCAAAAATTC-AAATATATCAGCATGCCAGGGTTCAAGGTAA 13753 Query 147913 ACGGCCAGCGCACC------TTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGTTG 147966 | ||| | ||||| |||| || || || |||| ||||| | | ||||| Sbjct 13754 ATGGCAAAAGCACCTGGTCTTTTA---TTACCTCCTTGGTTGACATATCTTGCTGTGTTG 13810 Query 147967 TTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTG 148026 ||||| || | | ||| || | | || | | | ||| || || ||| || Sbjct 13811 TTAAATACTTGGAGCATTGGAACTAAACCATTAGAAACGCCATTCGTTCCATTTATGGCA 13870 Query 148027 CTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATAT 148085 | || ||||| | ||| ||||| | || || || || |||| | || || || Sbjct 13871 GTTCCTTTAGCTCGAATACAGTGAACGTTCAATCCTATTCCTCCTGCCG-ATTTCGAAAT 13929 Query 148086 GGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGAC---GCC 148142 || || | || || | || || | ||| || | ||| | | Sbjct 13930 TAAGGCACATTGAGATAAAGTGTCAAAAATTCCTTTGAT--TGAATCCTCAGACATAGTC 13987 Query 148143 AAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACT 148202 || ||||||||| ||||| | ||| ||| | | ||||| || ||||| || ||| | Sbjct 13988 AA-CAAAAAACAAGAACATAATTGAGGAGTAGGGGTTCCTGCGTTAAAAAGAGTTGGAGT 14046 Query 148203 CGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTC 148262 || ||||||||| |||||| | ||| || || |||||||| |||| ||||| Sbjct 14047 AGCATGCGTAAACCATTTTTCAGACATGTAATTGTATGTTTCAATAGCAGCTTCAATGTC 14106 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTG 148322 || |||||| || | || || ||||| | || | ||||| ||| ||||| Sbjct 14107 TTCTTTGTGAATACCAACTGCAACACGCATTATCAAATAACCTGGTCTTTCAACAACTAC 14166 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 ||||| ||||| | |||| | || | |||||||| ||||| || |||| || Sbjct 14167 GCCATTGATTTTGAGCAAATATGCGCGCTCTAATGTTTTGTATCCAAAATAAGTGTATTC 14226 Query 148383 AAAATC 148388 ||||| Sbjct 14227 GAAATC 14232 >seq13 Length=696343 Score = 107 bits (118), Expect = 2e-18 Identities = 694/1100 (63%), Gaps = 48/1100 (4%) Strand=Plus/Plus Query 146749 ATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGA 146808 |||||||| | ||||| || || |||||| || |||||| | |||| |||||| Sbjct 649563 ATTTCCCACACTGTTTTATAAAGTTCCTTAATTTCATTTGGAATTTCGGCAATCTTTTGA 649622 Query 146809 ATAGAGCCCTTGTGC-GCAAAAATAG-TGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTT 146866 ||||| ||| ||| || | || || || || || | || | | || || | Sbjct 649623 ATAGA-CCCACCTGCTGCTATCATCTCTGATTT-TACTTTGTCAGTCCATAAATTAAGAT 649680 Query 146867 TAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC 146926 | | ||||||| || ||||| |||||| | |||||| ||||| | ||||| | Sbjct 649681 TGACAAGGTCATTAAGTAAATGTGAATTGACAATTTGAAAGTCGCCAGAAGTTACACGAC 649740 Query 146927 -TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCC 146985 ||| ||||| ||| || | ||||||| | ||||| || || | ||||| || Sbjct 649741 GTGA-ATACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCG 649799 Query 146986 GTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGT---ACGCACGG 147042 || | || || ||||| || | | ||| ||||||| | || | | ||| Sbjct 649800 GTTGAAGCTGTTGGCATAGGTGCAAGGAGCAAAGAATTTCTAACCCCATGTAATGCA--- 649856 Query 147043 ATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCG 147102 || | ||||| | ||||||||| | ||| || || || ||||||||||| Sbjct 649857 ATTCTTTCCTTAAGCCGACCCCAGTCCCAAAGATCCGATGGTGTAACATTCCACATGTCA 649916 Query 147103 TACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGC 147162 || || || | |||| | | || |||||| | || | ||| |||||||| Sbjct 649917 TATTGCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTT 649976 Query 147163 TGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTG 147222 | ||||||||||| ||| || | || |||| || || || || |||| |||| Sbjct 649977 TCGGCCAATTCACAAGATGCTTCCAACGAGCCATGATAGATTGTCTCAAATATTTTTTTG 650036 Query 147223 TTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACG-CAGAAGCACAAAGGCATCGGC 147281 |||| | | || || | | || ||| || | || || || || || Sbjct 650037 TTTAAATCCTTTGCATCAGAAGAAGCAAATGG-ATATTTCATCAACATGAAAGCGTCCGC 650095 Query 147282 CAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGC 147341 || || |||| ||| | || ||||||| || || ||| || ||| ||| | Sbjct 650096 TAATCCTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTT--TGAATTTCTTGCTTG- 650152 Query 147342 TATGGGA-----TAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTA 147396 ||||| || | |||| |||||||| || || | ||| | ||||||||| Sbjct 650153 --TGGGACCGGGTAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAACTTTG 650210 Query 147397 GTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC------CGTCTTCGACACGTACGCAT 147450 | || | | ||||| | |||||| | ||| || | || || ||| || Sbjct 650211 GCTACTTCATGAAGTTTTACAAAATCAAATTTCCTTGTATCGCCGTCAACTGCAACGAAT 650270 Query 147451 TGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG--TACT 147508 | ||| | ||| || || |||| ||| || || || |||| |||| || | || || | Sbjct 650271 TTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGG-GT-GATGAGTATT 650328 Query 147509 GCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTT 147568 | || ||||| | ||| |||||| |||||| || ||| | |||||| |||||||||| Sbjct 650329 GAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTT 650388 Query 147569 TCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 | | ||||| || || || || | ||||| || | || || || | ||| |||||| Sbjct 650389 TTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAA 650448 Query 147629 CGAT-------AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG 147681 | || ||| || | | ||| || | || ||| | | |||||| Sbjct 650449 CAATCTTTTTGAAAACTTCTCTTG-CCTTAACTTGAAC------TCGAAATCTGCCCTCA 650501 Query 147682 TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGA 147741 ||||| || || || || | ||| || || | || | ||||| || | ||| ||| Sbjct 650502 TTTTCATATCGTTCATAAAGTGCCTCGAATTCTTGACCCCAACAATCAGCTAAGCCTGGA 650561 Query 147742 CACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGA 147801 || | || || ||||||| |||||||| | || | | | | | |||||||| | Sbjct 650562 CATTCGTGTGGGCACATCAAAGACCACATACCATCGGTTTCAGTTCTTTTCATAAACAAA 650621 Query 147802 TCCGGCACCCACAGCGCGTA 147821 || || ||||||| | |||| Sbjct 650622 TCAGGGACCCACAACCCGTA 650641 >seq32 Length=411647 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||||||||| || | | | || |||||||| |||||||||||| || |||||| ||| Sbjct 326274 CAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATC 326215 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | || || |||| | |||| ||||| ||||||||||| || || ||||| || || Sbjct 326214 TTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTC 326155 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || ||| | | || | || || | | || ||||| | || | || Sbjct 326154 TTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGT 326095 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || ||||| || | |||||||||||| Sbjct 326094 TTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 >seq6 Length=947499 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | ||| |||||||| | ||||||| ||||| ||||||||||| || | || Sbjct 442189 ACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGT 442248 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | |||||| | || || |||| | |||| || | ||||| |||||||| || || Sbjct 442249 TCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCC 442308 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || || || | | || | || || | | ||| || || | Sbjct 442309 TTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAA 442368 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| || || || | ||| |||||||| Sbjct 442369 GGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608393951560