Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq32 125 7e-24 seq6 113 5e-20 seq2 96.9 4e-15 >seq32 Length=411647 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| | |||| ||| || | ||| || || ||||| ||||| |||||||||||| Sbjct 326289 TCCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGA 326230 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | || || | || || || ||||| || | ||| || ||||| || || Sbjct 326229 CAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGG 326170 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || |||||| ||| | ||||| || | ||| || Sbjct 326169 AATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGAC 326110 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || |||||||| ||||| ||||| | ||| ||||||||||| |||||| Sbjct 326109 TTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| |||| | || | ||| || || ||||| ||||| |||||||||||| Sbjct 326062 TTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGG 326003 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || || | ||||| || ||||| || || | || ||||| || | Sbjct 326002 ATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGG 325943 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | ||||| || | ||| | Sbjct 325942 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAA 325883 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || |||||||| ||||| || || ||||| || || ||||| |||||| Sbjct 325882 CTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || |||||||||||||| | || ||||| || || || ||||| || ||||| ||||| Sbjct 325704 TTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTG 325645 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | || || || | ||| || || ||||| ||||| || ||||| Sbjct 325644 GCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGTG 325585 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 | |||||| |||||||| |||| ||||||| Sbjct 325584 AGAGTTTTTACGAAAATCTGCA--TTGTTTT 325556 >seq6 Length=947499 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||||| | || | || || || || |||||||| ||||||||||| | Sbjct 442638 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442697 Query 134545 -CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | | || || | || || || ||||| || | | || || || || Sbjct 442698 TTAAAGTTCTCCCA-TCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442756 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| || || |||||| ||| | |||||||| | ||| Sbjct 442757 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCG 442816 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 442817 ACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||||||||| ||||||||||| || || | ||| || | || || || Sbjct 441986 GTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTCCTCCAATTGCTTTCCG 442045 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | | ||||| || || || || ||||| || ||||||||||| ||| Sbjct 442046 GCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTG 442105 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | |||||| || | |||||| || || ||||| | |||| Sbjct 442106 ACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGAGTT 442165 Query 134697 TTAACGAAAATTTGCATT 134714 || || |||||||||||| Sbjct 442166 TTGACAAAAATTTGCATT 442183 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||||| | || | ||| || || ||||| || || || ||||||||| Sbjct 442866 TTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGG 442925 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | || || | || || || ||||| || | | || || || || | Sbjct 442926 AGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAG 442985 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||||| || | |||||||| | || | Sbjct 442986 GAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAA 443045 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||||| ||||| || || | ||||||||||||||||||||| Sbjct 443046 CCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||||| | || | || || || || |||||||| ||||||||||| | Sbjct 442410 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442469 Query 134545 -CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || | | | | || || | || || || ||||| || | | || || || || Sbjct 442470 TTAAAGTTCTCCCA-TCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442528 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || ||||| || || |||||| ||| | |||||||| | ||| Sbjct 442529 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCG 442588 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || || |||||||| || || | || || ||||| ||||||||| Sbjct 442589 ACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 >seq2 Length=2086053 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| | || ||||| || || || ||||| || |||||||| || Sbjct 1233669 TTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTG 1233610 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | |||||||| | || || ||||| ||||| ||||||||||| Sbjct 1233609 GCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGTA 1233550 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || |||||||||||||| Sbjct 1233549 AGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395424466920