Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq16 178 2e-39 >seq16 Length=590713 Score = 178 bits (196), Expect = 2e-39 Identities = 366/538 (68%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 161160 AAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCG 161219 |||| |||||| ||| || ||| | ||| || ||| |||||||||||| ||||| Sbjct 481839 AAGTCCAACCTGCTGAAATTTACCATTTAGCTGCCCAGTCTCATGTGAAAGTTAGTTTCG 481780 Query 161220 AGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAG 161279 || || || |||||||| | ||||||| | ||||| | | | ||||| || | Sbjct 481779 AGTTGCCAGAGTATACAGCTGAAGTTGATGCTGTTGGAACTTTGCGTTTGTTGGATGCGG 481720 Query 161280 TTCGTCTCCTAGGTATGACAGA-TAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTG 161338 || || | | | || || | || || ||| | || || || || ||| ||||||| Sbjct 481719 TT-GTTGCTTGTGGATTGCAAAGTAAAGTTCGTTTTTATCAAGCTTCGACCTCTGAGTTG 481661 Query 161339 TATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCA 161398 ||||| ||| ||| | | || || || ||||| || || || ||| || ||| Sbjct 481660 TATGGAAAGGTTCAACAAATCCCTCAATCTGAGACAACTCCATTTTATCCAAGAAGTCCT 481601 Query 161399 TATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGG 161458 |||| || || || | |||| ||||||||||| ||||| || ||||| | |||| Sbjct 481600 TATGCTGTTGCAAAGTTGTATGCTTATTGGATTGTCAAGAATTATAGAGAAGCTCATGGT 481541 Query 161459 ATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTC 161518 || | || |||||| || || || || || || ||| |||| ||| ||||| Sbjct 481540 ATTTTTGGATCTAATGGTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCCTTCTTTC 481481 Query 161519 GTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTA 161578 |||||||| ||||||||| | | | |||||| || | ||||| || | Sbjct 481480 GTAACCCGAAAGATTACTCGTTCTGTTGCAAAAATTAGTCTTGGGTTCCAGGAATGCGTC 481421 Query 161579 TACCTAGGTAATCTAAACTC-AAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGC 161637 | |||||| || | |||| |||| |||||||||| |||||| | || ||||||||||| Sbjct 481420 TCCCTAGGCAACATCGACTCTAAGA-GAGATTGGGGGCATGCTAAGGAATATGTGGAGGC 481362 Query 161638 TATGTGGTTGATGTTACAACA---GGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 ||||||| || | ||||| ||| ||||||||| ||| |||||||| ||| Sbjct 481361 TATGTGGAGAATTCTTCAACACACTGAA---GCTGATGACTTTGTCATTGCCACCGGT 481307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729925302539480