Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq34 170 2e-37 seq30 114 1e-20 >seq34 Length=393842 Score = 170 bits (188), Expect = 2e-37 Identities = 339/497 (68%), Gaps = 14/497 (3%) Strand=Plus/Minus Query 19325 AATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAA 19384 |||| ||| || ||||| ||||| | | || |||||||| ||||| ||||| | Sbjct 196381 AATTAGGAATGAAGCATGTACGTGGCTTACTTCTGTATGGGCCTCCGGGAACGGGAAAGA 196322 Query 19385 CATTAATTGCGAGAGAACTTAGTAAA----TTACTTACAAAACAACCTCCCAAAATTGTA 19440 || | || || || | | ||| ||| || | | ||| | || |||||||| Sbjct 196321 CACTTATCGCAAG-GCAGATAGGAAAAATGTTGAATTCGAAAGAGCCA---AAAATTGTT 196266 Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 ||||| |||||||| || | || ||||| || |||| |||| |||||| || ||| Sbjct 196265 AATGGACCTGAAATTCTAGACAAGTATGTTGGAGAATCTGAAGCCAATGTAAGAAAGTTG 196206 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATA 19560 ||||||||||| |||| ||| || | |||| ||| |||| | ||||| || Sbjct 196205 TTTGCTGACGCCGAAGCTGAATGGAAGACATCCGGGCACAATTCTTCTCTTCACATCATC 196146 Query 19561 ATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG--TTCTGG-TGTAAAT---GGA 19614 || | |||||| | || || || |||||||||||||| || || || || | | Sbjct 196145 ATTTTCGATGAAATTGATGCTATTTGTAAGCAAAGAGGGAGTCAGGCTGGAAGTTCGTCA 196086 Query 19615 GTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAAT 19674 |||||||| || || |||||||| | ||||| || | || || ||| | ||||| || Sbjct 196085 GTACATGATACAGTCGTCAATCAGTTGCTGTCGAAGATGGATGGAGTTGATCAACTAAAC 196026 Query 19675 AATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGA 19734 ||| | || ||||||| ||||| |||||| || | || || || ||||| || Sbjct 196025 AATGTCTTGATTATTGGAATGACCAATAGAAGAGATATGATCGATGAAGCGTTATTGAGA 195966 Query 19735 CCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAA 19794 || || | ||||| || |||| || ||| || || |||||| |||| | ||| || Sbjct 195965 CCAGGAAGAATGGAAGTACAGATGGAGATTGCGTTGCCTGATGAACATGGAAGGGTGCAA 195906 Query 19795 ATTTTAAACATACATAC 19811 || || ||||| || || Sbjct 195905 ATCTTGAACATTCACAC 195889 >seq30 Length=447140 Score = 114 bits (126), Expect = 1e-20 Identities = 474/735 (64%), Gaps = 26/735 (4%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| ||||||||||| || || |||||||| | |||||| | || || Sbjct 101172 GTATTGGCTTTTTTTGCTGCATCAGATGGCATAGTCAACGCCAATTTGCTAGAACGCTTC 101113 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | | |||||| || | || || || | | |||||| |||| ||||| || ||| Sbjct 101112 ATGGATGAAGTTAAAATGCCCGAGGCTCTCTATTTTTACCGGTTCCAAATCTTTATTGAA 101053 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 || || ||||| || ||||| ||||| || | ||||| | |||| | || Sbjct 101052 AACATCCATTCTGAGATGTATTCGAAGCTGATTGAGGCTTACATTACTGATGCAAAGGAA 100993 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCG-ATTAAACATAAAGCAGACTG 44088 ||| || ||||||||||| | || | | |||| | || || | || || ||||| Sbjct 100992 AAGGATAAGTTGTTTAATGCTTTGGAGA-ACTACCCATGTATCAAGAAAAAGGCTGACTG 100934 Query 44089 GGCCCTTAAATGGATAAAT-TCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 ||| | |||||||| ||| ||| ||| | |||| || || ||| | || ||||| Sbjct 100933 GGCTTTGAAATGGATTAATGACAAGGATGCTCCTTTCGGGGAGCGATGCATTGCTTTTGC 100874 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 || || || || ||||||||||| ||||| ||||| | || || ||| | ||| | | Sbjct 100873 AGCCGTAGAGGGGATTTTCTTTTCCGGATCATTTGCTTCTATCTTCTGGATGAAG-AGCA 100815 Query 44206 AGGTTTGATGCCTGGGTTGACGT-TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | | || | |||| | || || |||||||| || | || |||||| | | Sbjct 100814 AAGGCAAATTACATGGTTTATGTCAATCCAATGAGTTGATTTCAAGAGACGAAGGCCTCC 100755 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 || | |||||||| || | | | | ||||| ||| | || | |||| Sbjct 100754 ATCGTGATTTTGCCTGTCTCATGTATCGCCTTCTAGATGACAAACCAACTCCCGCCAAGA 100695 Query 44325 CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCAT 44384 | ||| | ||| ||| || || || | || ||| | |||||| |||| | Sbjct 100694 TA--TAC-CAAATTATTGGCGAAGCCGTTGAAATCGAAAAGGAATTTTTGACGGAGTCTC 100638 Query 44385 TACCTGTAAATTTAATAGGAATGAATGA--ACTTTTGATGAACCAATATATTGAATACAT 44442 |||| | | | ||||||||| | || || ||| ||||| || |||||| | Sbjct 100637 TACCATGCTCTCTTCTCGGAATGAATCACGACCTT--ATGTCTCAATACATCGAATACGT 100580 Query 44443 TGCAGATCGTTTACT------TTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAA 44496 ||| |||| | |||| |||||||| | | ||| || | | | |||| Sbjct 100579 TGCCGATCATCTACTCATGACCTTGGAACT---ACCCAAAAAATACAACACT---AAAAA 100526 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || ||||| |||||||||||||| || ||| |||| ||||| || || || |||| | | Sbjct 100525 TCCTTTTGAGTTTATGGAAAATATCTCCTTGCAAGGGAAAACTAATTTCTTCGAAAGAAG 100466 Query 44557 CGTTGGAGAATATCA 44571 || |||||||| Sbjct 100465 AGTAACTGAATATCA 100451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453718478355