Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq30 122 7e-23 seq13 105 6e-18 seq76 104 2e-17 seq32 89.7 4e-13 >seq30 Length=447140 Score = 122 bits (134), Expect = 7e-23 Identities = 598/937 (64%), Gaps = 35/937 (4%) Strand=Plus/Plus Query 131327 ATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCG 131386 ||||| || | |||||||||||| ||| ||| | | |||||||||||||| | | Sbjct 98185 ATTGAAGCTAAATTACAAACTGCGACTTCATCAGGAGAAGAGTACTGAACAATTTCAGTG 98244 Query 131387 CACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG 131446 ||||||||| || || || || || | ||||||||| || ||||| || | Sbjct 98245 CACAAATTAGAGCATTTGATAGTTCCAAGATTTTGTTGGTTACTTTTTCTGTTGCAAGCA 98304 Query 131447 TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGT--ATCGAA 131504 || ||||| | |||||||| | || ||||| | |||| |||| || | || || Sbjct 98305 TCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAATTTGACTTTCGGCTATCTTCTTCAAA 98364 Query 131505 AGAGTTTTCGAGCAGAC----AATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCG 131560 |||| | | | | ||| | | ||||||| | || || | ||| || || || Sbjct 98365 AGAGCTCTTGCTCTGACTTGAACTCGATATTTCTTTT---CGAG---TTCATATTTAACG 98418 Query 131561 TACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACAC 131620 || || | ||| || | ||| || | || | |||| || ||||| | |||||| Sbjct 98419 TATAAGGCTTCGAATTCTTGTCCCCAGCAATCGGCCAAGCCAGGGCATTCATTAGGACAC 98478 Query 131621 ATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAAC 131680 || || ||||||| | ||| || ||| |||||||| | || || | ||||| | Sbjct 98479 ATAAGGGACCACATGTCGTCGGATTTGGCTCTTTTCATAAAAAGGTCAGGAATCCATAGC 98538 Query 131681 GCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAATTTAA 131739 | || |||| ||| | || || ||| || |||| ||||||| || | ||| Sbjct 98539 CCATAAAACAAATCACGTGCACGATTAGATTCAGT-TCCATCATTTTTTCGTAACTCTAA 98597 Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC------TTT 131793 || || || || || |||||||| ||||| | ||| | || | || || ||| Sbjct 98598 GAAATCGAAGATATCAGCATGCCAAGGTTCTAGATAAATGGCAAAAGCACCAGGTCTTTT 98657 Query 131794 GCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTC 131853 | || || ||||||| ||||| | | | || ||| | || ||||||| || | Sbjct 98658 G---TTGCCTCCTTGATCAACATACTTAGCGGTATTATTGAAGACCTGCAACATAGGGAC 98714 Query 131854 CAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTG--CCATTGGCTCTGATTTTG 131911 | || || | ||||||| || | |||| |||||| || || |||||||| Sbjct 98715 AAGTCCATTTGAAATTCCATTAGTTCCATTAA--TAGCTGACCCCTTAGCTCTGATACAA 98772 Query 131912 TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG 131971 || || || | ||||| || || | |||| || || | ||| |||| | | ||| Sbjct 98773 TGGACATTCAAGCCAATTCCACCTGCAGATTTTGAAATCAATGCACATTGAGACAAGGTG 98832 Query 131972 TTATAGATACCTTCCACGCTGTCCG-CGGCAATGTCGACTAAAAAGCAAGAGGACAACTG 132030 | | || |||| | || | | || ||| | |||||||| || |||| || Sbjct 98833 TCGAAAATTCCTTTAATCGAATCAGAAGACATAGTC-AGCAAAAAGCATGAAGACAGTTG 98891 Query 132031 TTGGTG-AAATGTGCCGGC--TGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTT 132087 |||| | |||| ||||| |||||| | ||||| ||||||| ||||| ||| | Sbjct 98892 -AGGTGTACATGTTCCGGCGTTGAAAAGA--GTGGGAGTGGCGTGAGTAAACCATTTCTC 98948 Query 132088 GGCCATGCACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGC 132147 | ||| | || | || |||||| | ||| || || || ||| | || Sbjct 98949 AGACATCAAATTGTAGGTTTCGATAGCGCCATTGATGTCATCCTTGTGAATGCCAACGGC 99008 Query 132148 GACCCGCATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATA 132207 || ||||| ||| ||| | | || || ||| || | || |||| || || Sbjct 99009 AACACGCATAATCATATGTCCAGGCCTTTCTACCACTTTTCCATTAATCTTGAATAAGTA 99068 Query 132208 ACCGTTTTCCAAAGTTTTGAAACCAAAATATTTGTAT 132244 | |||||||| || |||||||| ||||| ||||| Sbjct 99069 AGATTTTTCCAATGTCTTGAAACCGAAATAAGTGTAT 99105 >seq13 Length=696343 Score = 105 bits (116), Expect = 6e-18 Identities = 497/771 (64%), Gaps = 19/771 (2%) Strand=Plus/Plus Query 131327 ATTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGG 131384 ||||| |||| ||||||||| || | || || | || | || ||||||||||| | Sbjct 650283 ATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATG--AGTATTGAACAATTTCAG 650340 Query 131385 CGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACAT 131444 ||| | || || || || || || | |||||||||||||||||| || || Sbjct 650341 TGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTG-CAG 650399 Query 131445 GG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGA 131503 | ||||| ||| ||||| || | || ||||| | |||| |||||| ||| | | Sbjct 650400 GCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTG 650459 Query 131504 AAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTAC 131563 || | || || || | |||| | || ||| ||||| || ||| || Sbjct 650460 AAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTCATATCGTTCATAA 650519 Query 131564 AACGTTTCAAAGTTTTGGCCA-AACGAACTGTCCAAATTGGGACATTCGCTGGGACACAT 131622 | | || || | ||| || ||| | | | | || ||||||||| || ||||| Sbjct 650520 AGTGCCTCGAATTCTTGACCCCAACAATCAG-CTAAGCCTGGACATTCGTGTGGGCACAT 650578 Query 131623 TAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682 | ||||||| || | |||| || |||||||||||||| || ||||| ||| | Sbjct 650579 CAAAGACCACATACCATCGGTTTCAGTTCTTTTCATAAACAAATCAGGGACCCACAACCC 650638 Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAA 131741 ||| |||| || | || || ||||| |||| ||| ||||| || | |||| Sbjct 650639 GTAAAACAAGTCACGTGCACGATTGCTGTCTGT-TCCATCATTCTTTTTTAATTCCAAAA 650697 Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTGCGCT 131798 | || || || || |||||||||||||| | || | || | || || | | | Sbjct 650698 ATTCAAATATATCAGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTAT 650757 Query 131799 TACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAAC 131858 |||| ||||| | |||| | | ||||||| |||| | | ||| || | |||| Sbjct 650758 TACCTCCTTGGTCGACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAAC 650817 Query 131859 CGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGT 131918 | || | ||||| || | || ||| | || || |||| || |||||||| Sbjct 650818 CATTAGAAACGCCATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGT 650877 Query 131919 TGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977 | | ||| || ||||| |||| |||| || |||| || |||| | || ||||| | Sbjct 650878 TCAATCCTATTCCTCCTGCCG-ATTTCGAAATTAAGGCACATTGAGATAAAGTGTCGAAA 650936 Query 131978 ATACCTTCCACGCTGTCCGC-GGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTG-GT 132035 || |||| | ||| | | || |||| || || || ||||| ||||| || | || Sbjct 650937 ATTCCTTTGATTGAGTCTTCAGACATTGTCAAC-AAGAAACAAGAAGACAATTGAGGAGT 650995 Query 132036 GAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTT 132086 ||| || || || ||||| || || | ||||| ||||| ||||| Sbjct 650996 TAAA-GTTCCTGCGTTAAACAGAGTAGGTGTAGCGTGGGTAAACCATTTTT 651045 >seq76 Length=128862 Score = 104 bits (114), Expect = 2e-17 Identities = 431/667 (65%), Gaps = 15/667 (2%) Strand=Plus/Plus Query 131327 ATTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGG 131384 ||||| |||| ||||||||| || | || || | || | || ||||||||||| | Sbjct 13304 ATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATG--AGTATTGAACAATTTCAG 13361 Query 131385 CGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACAT 131444 ||| | || || || || || || | |||||||||||||||||| || || Sbjct 13362 TGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTG-CAG 13420 Query 131445 GG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGA 131503 | ||||| ||| ||||| || | || ||||| | |||| |||||| ||| | | Sbjct 13421 GCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTG 13480 Query 131504 AAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTAC 131563 || | || || || | |||| | || ||| ||||| || ||| || Sbjct 13481 AAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTCATATCGTTCATAA 13540 Query 131564 AACGTTTCAAAGTTTTGGCCA-AACGAACTGTCCAAATTGGGACATTCGCTGGGACACAT 131622 | | || || | || || ||| | | | | || ||||||||| || ||||| Sbjct 13541 AGTGCCTCGAATTCCTGACCCCAACAATCAG-CTAAGCCTGGACATTCGTGTGGGCACAT 13599 Query 131623 TAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGC 131682 | ||||||| || | |||| ||| |||||||||||||| || ||||| ||| | Sbjct 13600 CAAAGACCACATACCATCGGTTTCAGCTCTTTTCATAAACAAATCAGGGACCCACAACCC 13659 Query 131683 GTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAA 131741 ||| |||| || | || || ||||| |||| ||| || || || | |||| Sbjct 13660 GTAAAACAAGTCACGCGCACGATTGCTATCTGT-TCCATCATTCTTCTTTAATTCCAAAA 13718 Query 131742 AGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTGCGCT 131798 | || || || || |||||||||||||| | || | || | || || | | | Sbjct 13719 ATTCAAATATATCAGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTAT 13778 Query 131799 TACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAAC 131858 |||| ||||| || |||| | | ||||||| |||| | | ||| || | |||| Sbjct 13779 TACCTCCTTGGTTGACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAAC 13838 Query 131859 CGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGT 131918 | || | ||||| || | || ||| | || || |||| || |||||||| Sbjct 13839 CATTAGAAACGCCATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGT 13898 Query 131919 TGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAG 131977 | | ||| || ||||| |||| |||| || |||| || |||| | || ||||| | | Sbjct 13899 TCAATCCTATTCCTCCTGCCG-ATTTCGAAATTAAGGCACATTGAGATAAAGTGTCAAAA 13957 Query 131978 ATACCTT 131984 || |||| Sbjct 13958 ATTCCTT 13964 >seq32 Length=411647 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| |||||||| || ||||||||| | | | | | ||||| Sbjct 326042 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCC 325983 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||| || || | || | | |||||||| || || | || || || || | Sbjct 325982 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 325923 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | ||||||||||| ||||| |||| ||| Sbjct 325922 ATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTT 325863 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||| || ||||| || ||||| Sbjct 325862 CCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931960743752