Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq76 158 2e-33 seq13 149 8e-31 >seq76 Length=128862 Score = 158 bits (174), Expect = 2e-33 Identities = 444/668 (66%), Gaps = 18/668 (3%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || | ||| ||||| |||| | |||||| || || | ||||| ||||| || Sbjct 12767 TACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGAA 12826 Query 110768 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA-TGCGT 110824 ||||||||||| ||||| | | ||||| | | | || ||| | | | | | | | Sbjct 12827 GCTGTTGGCATAGGTGCAAGGAGCAAAGAATTT--CTAAC-CCCATGTAATGCAATTCTT 12883 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| || | |||| || | || || |||| | || |||| |||||||| | | Sbjct 12884 TCCTTAAGCCGACCCCAATCCCAAA-GATCTGATGGTGTAACATTCC-ACATGTCATATT 12941 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | |||| || | || ||||| | ||||| || | || | | ||||| Sbjct 12942 GCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCAG 13001 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||||||||| || |||| || | ||||| || |||||||| || || | Sbjct 13002 CCAATTCACAAGATGCTTCCAACGAACCATGATAGATTGTTTCAAATATTTTTTTGTTTA 13061 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 ||||| || || ||| |||||| || ||| || || | ||||| | | Sbjct 13062 AATCCTTTGCATCGGAAGAAGCAAATGGATATTTCATCAACATGAAAGCGTCCGCTAATC 13121 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC-AGTCTCAACG 111121 |||| |||||||||||||||||||||||| ||| || || |||| || || | || Sbjct 13122 CTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCG 13181 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || ||| | || ||||| ||| || | ||| | || |||| || | | |||| Sbjct 13182 GG-TAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCA 13240 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGAC-AT----ACTTTG-GAAGG 111235 ||||||||| || ||||||| | | || || | | || || | |||| | | Sbjct 13241 TGAAGTTTTGCAAAATCAAATTTCCTTGTATCGCCGTCAACTATAACGAATTTGTTTAAG 13300 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || |||||||||||||| |||||||| |||| || || ||| | | |||||| Sbjct 13301 GCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCA 13360 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| | ||||| || || | ||| | ||| || || || ||||||| Sbjct 13361 GTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAG 13420 Query 111356 GCATCCTT 111363 |||||||| Sbjct 13421 GCATCCTT 13428 >seq13 Length=696343 Score = 149 bits (164), Expect = 8e-31 Identities = 441/668 (66%), Gaps = 18/668 (3%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || | ||| ||||| |||| | |||||| || || | ||||| ||||| || Sbjct 649746 TACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGAA 649805 Query 110768 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA-TGCGT 110824 ||||||||||| ||||| | | ||||| | | | || ||| | | | | | | | Sbjct 649806 GCTGTTGGCATAGGTGCAAGGAGCAAAGAATTT--CTAAC-CCCATGTAATGCAATTCTT 649862 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTCAAACT 110882 ||||| || | ||||||| | || | |||| | || |||| |||||||| | | Sbjct 649863 TCCTTAAGCCGACCCCAGTCCCAAA-GATCCGATGGTGTAACATTCC-ACATGTCATATT 649920 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | |||| || | || ||||| | ||||| || | || | | ||| | Sbjct 649921 GCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCGG 649980 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||||||||| || |||| || | ||||| || || ||||| || || | Sbjct 649981 CCAATTCACAAGATGCTTCCAACGAGCCATGATAGATTGTCTCAAATATTTTTTTGTTTA 650040 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 ||||| || ||| ||| |||||| || ||| || || | ||||| | | Sbjct 650041 AATCCTTTGCATCAGAAGAAGCAAATGGATATTTCATCAACATGAAAGCGTCCGCTAATC 650100 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC-AGTCTCAACG 111121 |||| |||||||||||||||||||||||| ||| || || |||| || || | || Sbjct 650101 CTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCG 650160 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || ||| | || ||||| ||| || | ||| | || |||| || | | |||| Sbjct 650161 GG-TAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCA 650219 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTC----TTCATTG--ACATACTTTGGAAGG 111235 ||||||||| || ||||||| | | || || | | || || | || | | Sbjct 650220 TGAAGTTTTACAAAATCAAATTTCCTTGTATCGCCGTCAACTGCAACGAATTTGTTTAAG 650279 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || |||||||||||||| |||||||| |||| || || ||| | | |||||| Sbjct 650280 GCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCA 650339 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| | ||||| || || | ||| | ||| || || || ||||||| Sbjct 650340 GTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAG 650399 Query 111356 GCATCCTT 111363 |||||||| Sbjct 650400 GCATCCTT 650407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028302461600