Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq108 102 1e-16 seq30 98.7 1e-15 seq2 87.8 2e-12 >seq108 Length=67188 Score = 102 bits (112), Expect = 1e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 117909 GTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCC 117968 ||||| |||| | |||||| ||||||||||| || || |||||| || ||| |||||| Sbjct 7149 GTTGGTTTTTCTACGAAGAGATTCATACTTTGAGACTGGTCGATGTAGGCTCCACGATCC 7090 Query 117969 GCCGCCATATCAATCACATC-CTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTT 118027 || |||||| | || | || ||| | | | ||| |||||||| |||| || | ||| Sbjct 7089 GCTGCCATACCCATTAATTCTCTTTGAC-TCAGTTCATACACAGTCTTGTAAAGTTCCTT 7031 Query 118028 AATATCATCTGGGATATCCACGATATTTTGGATGGATCCA 118067 |||||| || || || |||||||||| ||||||||| Sbjct 7030 AATATCCGAGGGAATTTCTTCGATATTTTGAATGGATCCA 6991 >seq30 Length=447140 Score = 98.7 bits (108), Expect = 1e-15 Identities = 241/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572 |||| || || |||| || | |||||||| || | |||||| || | ||||||||||| Sbjct 97979 ACAACATGAAAGCATCAGCTAATCCTTGGACCCCCAAGCCAATAGGCCTATGTCTCATAT 98038 Query 118573 TAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 118632 | || || | ||| || || ||| |||| ||| ||||| | || | ||| | Sbjct 98039 TTGAGTTTCTAGCTTCAGGAACAGGGTAATAATTGACATCAATAACTTTGTTCAAATTCT 98098 Query 118633 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC-----GAGTCTC 118687 | || | |||||| | | || ||||||||| ||||| | | | | ||| Sbjct 98099 TCGTAATAACCTTAGCAACTTGATGAAGCTTGGGATAATCCATTGTTCTTTTTGCATCTT 98158 Query 118688 T-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 118746 | ||||| ||| | || | ||| ||||| || | |||||| || | | ||||| Sbjct 98159 TATCATTAACAAATTTGTTCAAGGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAG 98218 Query 118747 TATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCT 118806 | || ||||| | |||||| |||||||| || || | || || || || | || | Sbjct 98219 GAGAAGAGTACTGAACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTT 98278 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 ||| || ||| |||| || ||||| |||||||| ||||| || | || || || Sbjct 98279 GTTGGTTACTTTTTCTGTTGCAAGCATCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAA 98338 Query 118867 TTTG 118870 |||| Sbjct 98339 TTTG 98342 >seq2 Length=2086053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 179745 TGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATC 179804 ||||||| | ||||||| | ||||| |||||||||||||||||| || ||||| | ||| Sbjct 276090 TGGCCAGTTGCAGTGGATGAAATTGATGATGAGACCCTTAATGTGGGATCCATCCTGATC 276149 Query 179805 CGCATCCGTCATAATCATAAGCCGACCATAGCGAAG 179840 ||| | ||||||||||| ||||| || ||||| Sbjct 276150 TTGATCGGCCATAATCATAATGCGACCGTACCGAAG 276185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431558962760