Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq76 127 2e-24 seq13 123 3e-23 >seq76 Length=128862 Score = 127 bits (140), Expect = 2e-24 Identities = 614/963 (64%), Gaps = 24/963 (2%) Strand=Plus/Minus Query 104908 TCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 104967 ||||| || || || | || ||||| | | || || ||||| ||| ||| || || Sbjct 13462 TCAAATTGAAACAGGAGCTCCTTACATTTTGTTTAAGGATGCCTGCAACAGAAAAAGCAA 13403 Query 104968 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 |||| | ||| | || || || | ||||| ||||| || ||||| | ||| | Sbjct 13402 TCAACAAAATCTTGGAACTATTAAATGCTCCAACCTCTGCACTGAAATTGTTCAATACTC 13343 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT-----AT 105082 | || |||| ||||| ||||| | |||||||| || | ||| | || Sbjct 13342 ATCACCCGAGGAGATTGCTGTTTGTAATTTGGCATCAATTGCCTTAAACAAATTCGTTAT 13283 Query 105083 -GTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 || || || |||| || |||||||| || |||||| || ||||| | ||| ||| Sbjct 13282 AGTTGACGGCGATACAAGGAAATTTGATTTTGCAAAACTTCATGAAGTAGCCAAAGTTGT 13223 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 105201 || | |||| | || | |||||||||| || | |||||| || || | || Sbjct 13222 AACTAGAAACTTGAATAAAGTTATTGATGTCAACTATTACCCGGTCCCACAAGCAAGAAA 13163 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 || || |||| |||| | || |||||| | ||||| || || | ||||| | ||||| Sbjct 13162 TTCAAACATGAAACACAGACCTATTGGTTTGGGTGTCCAAGGATTAGCGGACGCTTTCAT 13103 Query 105262 TCTTTGTCGCCACG--CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTT 105319 ||| | | |||||| ||| ||| || ||||| | || |||||| Sbjct 13102 G--TTGATGAAATATCCATTTGCTTCTTCCGATGCAAAGGATTTAAACAAAAAAATATTT 13045 Query 105320 GAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA 105379 || || || ||||| | | | || || || || ||||| || || || ||| Sbjct 13044 GAAACAATCTATCATGGTTCGTTGGAAGCATCTTGTGAATTGGCTGAAAGCGACGGACCA 12985 Query 105380 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 105439 || ||||| | ||||| || | ||| |||| | || |||| ||| |||||| || Sbjct 12984 TACTCAACCTACGCTGGTTCCCCTGTTTCTAAAGGAATTCTGCAATATGACATGTGG-AA 12926 Query 105440 GGTGAGACCA--AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCA-AGGAGAAG 105496 || | |||| || | | | || |||| || |||||| | || | | | | Sbjct 12925 TGTTACACCATCAGAT-CTTTGGGATTGGGGTCGGCTTAAGGAAAGAATTGCATTACATG 12867 Query 105497 GGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTG 105556 || || | || | | ||| | || || ||||||||||| || ||||| ||||| | Sbjct 12866 GGG-TTAGAAATTCTTTGCTCCTTGCACCTATGCCAACAGCTTCAACCGCTCAAATTCTT 12808 Query 105557 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA--ACCCTCG 105614 || || |||||| | |||| || || || | || || ||| | | | |||| Sbjct 12807 GGAAACAATGAAAGTATTGAGCCATATACATCTAATATGTATTCACGTCGTGTAACCTCT 12748 Query 105615 CGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCT 105674 || || ||| |||||||| ||| | | ||||||| | || | | | Sbjct 12747 --GGCGACTTTCAAATTGTCAATTCACATTTACTTAATGACCTTGTCAATCTTAATTTAT 12690 Query 105675 GGTCCAAGGATATGAAGGATCTCA--TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGT 105732 || | | | | || ||| | || | ||| ||||| || |||||||| |||| Sbjct 12689 GGACTGACAAAGTAAA--ATCAGAGATGATAGCAGCAGGTGGGTCTATTCAAAAGATTGC 12632 Query 105733 GGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGA 105792 || |||||||||||||||||| | | ||| ||||| |||||||||| ||||| Sbjct 12631 CGAAATTCCAAATGAAATTAAGGAACTTTACAAAACAGTCTGGGAAATCAGTCAAAAGGA 12572 Query 105793 TGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 105852 | || | | ||||| || |||||||| ||||| |||||| ||| |||||||| Sbjct 12571 TATCTTAAATATGGCAGCTGATCGTGGAGCATTCATCGATCAATCTCAGTCAATGAATCT 12512 Query 105853 CTT 105855 || Sbjct 12511 ATT 12509 >seq13 Length=696343 Score = 123 bits (136), Expect = 3e-23 Identities = 665/1045 (64%), Gaps = 26/1045 (2%) Strand=Plus/Minus Query 104908 TCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 104967 ||||| || || || | || ||||| | | || || ||||| ||| ||| || || Sbjct 650441 TCAAATTGAAACAGGAGCTCCTTACATTTTGTTTAAGGATGCCTGCAACAGAAAAAGCAA 650382 Query 104968 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 |||| | ||| | || || || | ||||| ||||| || ||||| | ||| | Sbjct 650381 TCAACAAAATCTTGGAACTATTAAATGCTCCAACCTCTGCACTGAAATTGTTCAATACTC 650322 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 | || |||| ||||| ||||| | |||||||| || | ||| | || | Sbjct 650321 ATCACCCGAGGAGATTGCTGTTTGTAATTTGGCATCAATTGCCTTAAACAAATTCGTTGC 650262 Query 105088 --TCCA----GAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 | | || |||| || |||||||| || |||||| || ||||| | ||| ||| Sbjct 650261 AGTTGACGGCGATACAAGGAAATTTGATTTTGTAAAACTTCATGAAGTAGCCAAAGTTGT 650202 Query 105142 CACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 105201 || | |||| | || | |||||||||| || | |||||| || || | || Sbjct 650201 AACTAGAAACTTGAATAAAGTTATTGATGTCAACTATTACCCGGTCCCACAAGCAAGAAA 650142 Query 105202 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 || || |||| |||| | || |||||| | ||||| || || | ||||| | ||||| Sbjct 650141 TTCAAACATGAAACACAGACCTATTGGTTTGGGTGTCCAAGGATTAGCGGACGCTTTCAT 650082 Query 105262 TCTTTGTCGCCACG--CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTT 105319 ||| | | |||||| ||| || || ||||| | || |||||| Sbjct 650081 G--TTGATGAAATATCCATTTGCTTCTTCTGATGCAAAGGATTTAAACAAAAAAATATTT 650024 Query 105320 GAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA 105379 ||||| || ||||| | | | | || || || || ||||| || || || ||| Sbjct 650023 GAGACAATCTATCATGGCTCGTTGGAAGCATCTTGTGAATTGGCCGAAAGCGACGGACCA 649964 Query 105380 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 105439 || ||||| | ||||| || | ||| |||| | || |||| ||| |||||| || Sbjct 649963 TACTCAACCTACGCTGGTTCCCCTGTTTCTAAAGGAATTCTGCAATATGACATGTGG-AA 649905 Query 105440 GGTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCA-AGGAGAAGG 105497 || | |||| | || | ||||||| || |||||| | || | | | || Sbjct 649904 TGTTACACCATCGGATCTTTGGGACTGGGGTCGGCTTAAGGAAAGAATTGCATTACATGG 649845 Query 105498 GTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGG 105557 | || | || | | ||| | || || ||||||||||| || ||||| ||||| | | Sbjct 649844 GG-TTAGAAATTCTTTGCTCCTTGCACCTATGCCAACAGCTTCAACCGCTCAAATTCTTG 649786 Query 105558 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA--ACCCTCGC 105615 | || |||||| | |||| || || || | || || ||| | | | | || Sbjct 649785 GAAACAATGAAAGTATTGAGCCATATACATCTAATATGTATTCACGTCGTGTAACTTCT- 649727 Query 105616 GGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTG 105675 || || ||| |||||||| ||| | | ||||||| | || | | || Sbjct 649726 -GGCGACTTTCAAATTGTCAATTCACATTTACTTAATGACCTTGTCAATCTTAATTTATG 649668 Query 105676 GTCCAAGGATATGAAGGATCTCA--TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTG 105733 | | | | | || ||| | || | ||| ||||| || |||||||| |||| Sbjct 649667 GACTGACAAAGTAAA--ATCAGAGATGATAGCAGCAGGTGGGTCTATTCAAAAGATTGCC 649610 Query 105734 GATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGAT 105793 || |||||||||||||||||| | | || ||||| |||||||||| ||| ||| Sbjct 649609 GAAATTCCAAATGAAATTAAGGAACTTTATAAAACAGTGTGGGAAATCAGTCAGAAAGAT 649550 Query 105794 GTCATTGA-CATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT 105852 | ||| | ||||| || |||||||| ||||| |||||| ||| |||||||| Sbjct 649549 AT-ATTAATTATGGCAGCTGATCGTGGAGCATTCATCGATCAATCTCAGTCAATGAATCT 649491 Query 105853 CTTCATGGAAAGTCCAACGATGTCCAAGCTCT-CTTCTATGCACATGTACAGTTGGAAGA 105911 || | |||| || || | ||| | ||| | || ||| | | || |||||||| Sbjct 649490 ATTTGTAGAAAAACCTTCGCT-TCCTAATTCTACATCAATGTTCTTTTATAGTTGGAAAC 649432 Query 105912 AGGGTCTCAAAACGGGGATGTATTA 105936 ||| | ||||| || |||| || Sbjct 649431 TAGGTTTAAAAACTGGAGTGTACTA 649407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257366052040