Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq108 102 9e-17 >seq108 Length=67188 Score = 102 bits (112), Expect = 9e-17 Identities = 344/530 (65%), Gaps = 32/530 (6%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| | || | || || || |||||||||||||| || || Sbjct 5554 TGAGACTTACAACTTGATGTCTGAGAAATGGTTCACTCATGCCACGCCAACCCTTTTTAA 5613 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| | ||||| | || ||| ||| | || | || ||||| || Sbjct 5614 CGCTGGTACTTGTATTCCTCAACTTTCCTCCTGTTTCTTATTGACCATTGCTGATGATTC 5673 Query 53362 GATCGACGGCATCTACGAGAC----GCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGG 53417 || || || |||||| |||| ||||| |||||| | ||||| || | | | Sbjct 5674 AATTGATGGAATCTACAAGACTTTATCTCAA----TGTGCCAAGATCTCTAAATCTGCTG 5729 Query 53418 GTGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 | || ||||| || || | || || | || || || | | ||||| || || | Sbjct 5730 GAGGAATCGGACTCAACGTCCACAAAATCAGAGCCAAAGGTTCCGCTATCAATGGTACTA 5789 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 | || || | ||||| | || || ||||||| || ||||| | || ||| ||| | Sbjct 5790 ATGGAATCTCGAATGGACTTGTTCCAATGCTCCAAGTATTCAATAGTACCGCCAAGTATG 5849 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 || |||| || |||| | ||| || | || || || || || || || ||| Sbjct 5850 TCGACCAAGG----AGGAAACAAAAGACCTGGTGCTTTTGCTATTTATCTAGAACCATGG 5905 Query 53594 CACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG--- 53650 || || || || ||||| ||||| ||||| | ||| | | || | | ||||| Sbjct 5906 CATGCTGATATCATGGATTTTCTGGAGCT---TAAGAAAAATGATG--GGACAGATGCCA 5960 Query 53651 --CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 || || ||| ||||| | |||||||||||||| || |||||| ||||| | Sbjct 5961 ATCGGGCACGAGACTTGTTTTACGGGCTGTGGATTCCGGATCTTTTCATG-AAAAG--AG 6017 Query 53709 AGAAGGACGAGGA---GTGGTACCTGATGTGCCCGAACGAGTGCCCCGGC 53755 ||||| | || ||||| ||||||| || || || ||||| ||| Sbjct 6018 CCAAGGAAGGTGAAATGTGGTCTTTGATGTGTCCTAATGAATGCCCTGGC 6067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212778265800