Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 161 1e-34 seq32 143 3e-29 seq39 122 1e-22 seq2 107 2e-18 seq16 89.7 6e-13 >seq6 Length=947499 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || || |||||||| | ||||||||| || Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || |||||||| |||||| | || |||| |||||||| | ||||| || Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 | |||| || ||||| ||||| || Sbjct 442915 TATCCAGAAAGAATCAACTCTCCA 442892 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || || ||||| ||||| |||||| | || || || | Sbjct 442183 AATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTC 442124 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | ||||| |||||||| |||||||| ||||| ||||||||||| Sbjct 442123 GGACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCA 442064 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || |||||| | ||||| | ||||| || ||||||| || Sbjct 442063 GCAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAA 442004 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || | ||| | || || | ||||| ||||| Sbjct 442003 CATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGG 441956 Score = 152 bits (168), Expect = 6e-32 Identities = 162/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| ||||| || || |||||||| | ||||||||| || Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||||||| || || ||||| || ||||| ||||||||||| Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || ||||| || |||||| | || |||| | || || ||||| || Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAA 442232 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| || ||||||||| | |||||| Sbjct 442231 CATCCAAAAGGAGTCAACTCTTCATTTGGTCTTG 442198 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| || || || || || || || || || | Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 442579 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442520 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || ||||| || |||||| | ||||||| | || || ||||| || Sbjct 442519 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442460 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||||||||| || || |||||| | ||| Sbjct 442459 CATCCAAAAGGAGTCAACCCTTCATTTGGTC 442429 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| | ||||| || || || || || || || || | Sbjct 442867 AATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442808 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | || ||||| || || |||||||| ||||| ||||||||||| Sbjct 442807 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442748 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || ||||| || |||||| | ||||||| | || || ||||| || Sbjct 442747 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442688 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 |||||||||| || || |||||| | ||| Sbjct 442687 CATCCAAAAGGAGTCAACCCTTCATTTGGTC 442657 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 27399 TACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 ||| ||||||||||| ||||| || ||||| || || ||||| || || | |||||||| Sbjct 443378 TACCATAATGCAAATTTTTGTAAAAACGCTAACAGGAAAGACAATCACCTTGGAGGTTGA 443319 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 | |||| || | || | || || || ||||| |||||||| |||||||| || Sbjct 443318 AGCTTCGGATACGATCGACAACGTCAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACC 443259 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| ||| | || |||||||| |||||| Sbjct 443258 AGACCAACAGAGACTCATTTTTGCCGGTAAG 443228 >seq32 Length=411647 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| |||||||| || || ||||||||||| || || | Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | || || || || || |||||||| |||||||| ||||| || Sbjct 326121 TGACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 326180 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || ||||| || |||||| | || |||| ||||| | | ||||| || Sbjct 326181 ACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAA 326240 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| ||||| || ||||| | || ||| | ||||| || ||| Sbjct 326241 CATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGGA 326289 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| | || || || |||||||||||||| ||||| | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || || |||||||| |||||||| ||||| || Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| |||||||| || ||| | || |||| | ||| || | ||||| || Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 ||||||| ||||| || ||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCA 326036 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || ||||||||||| || |||||||||||||| | Sbjct 325561 AATGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTC 325620 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | ||| | ||||| ||||| || |||||||| |||||||||||||| || Sbjct 325621 TGATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCA 325680 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || | | |||||||| |||||| Sbjct 325681 ACAAAGATTGATTTTTGCAGGTAAG 325705 >seq39 Length=348097 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27400 ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG 27459 || |||||||||||||| |||||||| | || || ||||| ||||| |||||||| ||| Sbjct 169809 ACGATAATGCAAATCTTCGTCAAGACATTGACTGGTAAGACCATTACCCTTGAGGTAGAG 169868 Query 27460 TCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 | || | || | ||| | |||||||||||||| |||||||| |||||||||||| Sbjct 169869 GCTTCAGACACTATCGAGAATGTAAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCA 169928 Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || | |||| ||||| |||||| Sbjct 169929 GATCAACAAAGATTAATCTTTGCCGGTAAG 169958 >seq2 Length=2086053 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| |||||||| || || ||||| || ||||||||| | Sbjct 1233527 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCC 1233586 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| | || || || ||||| |||||||| |||||||||||||| || Sbjct 1233587 GACACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 1233646 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || | | || ||||| |||||| Sbjct 1233647 CAAAGATTGATCTTTGCCGGTAAG 1233670 >seq16 Length=590713 Score = 89.7 bits (98), Expect = 6e-13 Identities = 241/367 (66%), Gaps = 15/367 (4%) Strand=Plus/Minus Query 24743 TGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCG 24802 |||| ||| ||| ||||| || | | || || || ||||| |||||||||||||| | Sbjct 481667 TGAGTTGTATGGAAAGGTTCAACAAATCCCTCAATCTGAGACAACTCCATTTTATCCAAG 481608 Query 24803 AAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGC 24862 ||| || |||| || ||||| ||| || || ||||| |||||| || | || || Sbjct 481607 AAGTCCTTATGCTGTTGCAAAGTTGTATGCTTATTGGATTGTCAAGAATTATAGAGAAGC 481548 Query 24863 CCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACC 24922 ||||| || | || || || || || || || || || || || | || || || Sbjct 481547 TCATGGTATTTTTGGATCTAATGGTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCC 481488 Query 24923 TGAATTTGTTACACGAAAGATTACTCTTGGTATTG--ACCATTGGATCAAGACAAGGGCA 24980 | || || || ||||||||||||| | | ||| | ||| || | ||| Sbjct 481487 TTCTTTCGTAACCCGAAAGATTACTCGTTCTGTTGCAAAAATT------AGTCTTGGGTT 481434 Query 24981 CC--TATTGAG-----CTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGA 25033 || | || | || || ||| | || | || | |||||||||||||| || Sbjct 481433 CCAGGAATGCGTCTCCCTAGGCAACATCGACTCTAAGAGAGATTGGGGGCATGCTAAGGA 481374 Query 25034 CTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGG 25093 || || || || |||||| | || || ||||| | | | | || || ||||| || | Sbjct 481373 ATATGTGGAGGCTATGTGGAGAATTCTTCAACACACTGAAGCTGATGACTTTGTCATTGC 481314 Query 25094 CACCGGT 25100 ||||||| Sbjct 481313 CACCGGT 481307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307042297520