Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 149 5e-31 seq32 145 7e-30 seq2 93.3 4e-14 >seq6 Length=947499 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||| ||| | |||||| | ||||||||| | || Sbjct 442182 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTCG 442123 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||||||||| ||||| || || || || || Sbjct 442122 GACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 442063 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || |||||||| ||| | || |||| || |||||| Sbjct 442062 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAAC 442003 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || ||||| ||||||||| || | | || ||||| Sbjct 442002 ATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGG 441956 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||| || | || || || ||||| ||| | ||| Sbjct 442866 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442807 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || |||||||| ||||| || || || || ||| Sbjct 442806 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442747 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || |||||||| || | || | || |||||| Sbjct 442746 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442687 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | |||||||| Sbjct 442686 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || ||||||| | || || || | || Sbjct 442410 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCT 442351 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || |||||||||||||| || || || || ||| Sbjct 442350 GACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAA 442291 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || ||||| ||||| | || | || |||||| Sbjct 442290 CAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAAC 442231 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | |||||||| ||| | ||||| || || || Sbjct 442230 ATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGGAAT 442181 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || || | || || || ||||| ||| | ||| Sbjct 442638 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442579 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || |||||||| ||||| || || || || ||| Sbjct 442578 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442519 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||| || |||||||| || | || | || |||||| Sbjct 442518 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442459 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| ||| | |||||||| Sbjct 442458 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || || ||||||| | || || || | ||| Sbjct 443094 ATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCC 443035 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| |||||||||||||| ||||| || || || || ||| Sbjct 443034 GACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 442975 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||||| ||||| | ||| | ||||| ||||| Sbjct 442974 CAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAAT 442915 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || || || || || | || |||||| Sbjct 442914 ATCCAGAAAGAATCAACTCTCCACTTGGTT 442885 >seq32 Length=411647 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || || |||||||||||||||| ||| | || Sbjct 325834 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 325893 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| ||||| || || || |||||| Sbjct 325894 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 325953 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | || || |||||||||||||| | ||| | ||||| |||||| Sbjct 325954 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAAC 326013 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || ||||| || || ||| | || |||||| Sbjct 326014 ATCCAAAAAGAATCTACCCTTCACTTGGTT 326043 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| || | |||||||||||||| ||| | || Sbjct 326062 ATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCT 326121 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || |||||||| ||||| || || || |||||| Sbjct 326122 GACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 326181 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || ||||||||||| | || | ||||| |||||| Sbjct 326182 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAAC 326241 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||| || || ||| | || ||||||||| Sbjct 326242 ATCCAAAAAGAATCTACCCTTCACTTGGTTTTG 326274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||||| ||||||||| | || |||||||| || ||| | || Sbjct 325562 ATGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTCT 325621 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| ||||| |||||||| ||||| || || || |||||| Sbjct 325622 GATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 325681 Query 27108 CA 27109 || Sbjct 325682 CA 325683 >seq2 Length=2086053 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 26965 ATAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTA 27024 || ||||| |||||| || | |||||| || || ||||| || || ||||| || | | Sbjct 1233504 ATTAATTTGGTAATTTTTAGGTCATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAA 1233563 Query 27025 TTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACA 27084 |||| || || || || | |||||| | || || | |||||| || |||||||||| Sbjct 1233564 TTACCCTCGAGGTTGAGGCCTCCGACACCATCGAAAATGTCAAAGCCAAGATTCAAGACA 1233623 Query 27085 AAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAA 27130 | ||||| || || || |||||||| | || || | ||||| || Sbjct 1233624 AGGAAGGAATTCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAA 1233669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915839417920