Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq32 113 3e-20 seq6 98.7 7e-16 >seq32 Length=411647 Score = 113 bits (124), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || || |||||||| |||||| ||||| |||| |||||| | | Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| |||||| || || ||||| ||||| |||| || Sbjct 326121 TGACACCATTGACAAC--GTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAT 326178 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| | || ||||||||||| |||||||| || | || | |||||||| ||| Sbjct 326179 CAACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTAC 326238 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| || | || ||||||||| | | ||||| || Sbjct 326239 AACATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGG 326288 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || ||| | || || ||| |||||| |||| || ||| | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| ||||| || || ||||| ||||| |||| || Sbjct 325893 TGACACCATTGACAAC--GTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGAT 325950 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | ||||| ||||| |||||||||||||| || | | | | ||| ||||| ||| Sbjct 325951 CAACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTAC 326010 Query 27967 AACATCCAAAAAGA 27980 |||||||||||||| Sbjct 326011 AACATCCAAAAAGA 326024 >seq6 Length=947499 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| |||||||| || || || ||||| | || || ||| | | Sbjct 442183 AATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTC 442124 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | | ||| ||||| ||||| ||||| ||||| | || || Sbjct 442123 GGACACTATTGATAAT--GTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGAC 442066 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | | || ||||||||||| |||||||| |||| ||| | | || || ||| Sbjct 442065 CAGCAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTAC 442006 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || || |||||||||||| || | | ||||| || Sbjct 442005 AACATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGG 441956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860357238617