Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq32 178 3e-39 seq6 161 2e-34 seq2 114 3e-20 >seq32 Length=411647 Score = 178 bits (196), Expect = 3e-39 Identities = 175/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| | || | |||||| || || |||||||||||||| || || | | Sbjct 326286 TCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAA 326227 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| ||||| || || |||||||| |||||||| || || |||| Sbjct 326226 AGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAAT 326167 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| |||||||| ||| ||||| || |||||||||||| ||| || || Sbjct 326166 TCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTC 326107 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || || |||||||| || || | ||||||| Sbjct 326106 AAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 172 bits (190), Expect = 1e-37 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| || || | |||||| || || |||||||||||||| || || | | ||| || Sbjct 326052 AAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCT 325993 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| || || || || ||||| | | |||||| || || |||| |||||| Sbjct 325992 TCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTC 325933 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||| |||||||| || ||||| || ||||||||||| |||||| || ||||| Sbjct 325932 CTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGT 325873 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || | |||||| ||||| | ||||||| Sbjct 325872 AATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| ||||| || || | | |||||| || ||||||| |||||||||||| ||||| || Sbjct 325705 CTTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 325646 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || |||||||| ||||| ||||||||| |||||||| ||||| || || Sbjct 325645 GGCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGT 325586 Query 211091 GAGAGTCTTTACAAACACCTGCATTTTATGGTTACT 211126 |||||| ||||| || | ||||||| | | || ||| Sbjct 325585 GAGAGTTTTTACGAAAATCTGCATTGTTTTGTAACT 325550 >seq6 Length=947499 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||||| || ||||| ||||||||||| || || | || || Sbjct 442421 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442480 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||| || || |||||||| | ||||||||| ||||| | ||||||| Sbjct 442481 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442540 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| ||||| ||||||||||| || ||| || || || ||| Sbjct 442541 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442600 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || ||||| || || | |||||| Sbjct 442601 ATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| ||||| | ||||| || ||||| ||||||||||| || || | || || Sbjct 442649 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442708 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| ||||| || || |||||||| | ||||||||| ||||| | ||||||| Sbjct 442709 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442768 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| ||||| ||||||||||| || ||| || || || ||| Sbjct 442769 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442828 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || | |||||| || || | |||||| Sbjct 442829 ATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 150 bits (166), Expect = 4e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| | ||| | ||| | |||||||| ||||| ||||||||||| || || | Sbjct 442186 TCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAA 442245 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || || |||||||| | ||||| || || |||||||| | ||||||||| ||||| | Sbjct 442246 AGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGAT 442305 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| ||||| |||||||| || || || |||||||||||||| |||||||| Sbjct 442306 TCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTC 442365 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || || || ||||| || || ||||| || || | ||||||| Sbjct 442366 CAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | || | || || || ||||||||||| || || | ||| || Sbjct 441961 ACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGT 442020 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| || |||| ||||| || || |||||||| | ||| ||||| ||||| | ||| Sbjct 442021 ACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCC 442080 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || || || || || || ||||| ||| ||| || || | Sbjct 442081 TTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAA 442140 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || |||||||| |||||||| || ||||| | |||||| Sbjct 442141 AGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | ||| ||||| || ||||| ||||| || || || | ||||| | Sbjct 442877 AGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGG 442936 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | ||||| || || |||||||| | ||||||||| ||||||| ||||||| Sbjct 442937 CCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTCCTTCC 442996 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || || || || || || ||||||||||| || |||||||| | || Sbjct 442997 TTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCAAGGTA 443056 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || || || || || || | |||||| Sbjct 443057 ATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 105 bits (116), Expect = 2e-17 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || || | |||||||| || |||| |||||||||||| || ||||| Sbjct 443228 CTTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTT 443287 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| ||||| || || || ||||||||| | ||||| |||||||| || Sbjct 443288 CGCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGT 443347 Query 211091 GAGAGTCTTTACAAACACCTGCATTTTATGGT 211122 || || |||||||| | |||| ||||||| Sbjct 443348 TAGCGTTTTTACAAAAATTTGCA--TTATGGT 443377 >seq2 Length=2086053 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||| | ||| || || ||||| | | |||||| || ||||||| |||||||||||| Sbjct 1233679 TTACAGATACTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTC 1233620 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || ||||| ||| || |||||||||||||| ||| ||||||||||| || || || Sbjct 1233619 TTGAATCTTGGCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGT 1233560 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || | ||||| Sbjct 1233559 TTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145004879915