Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq32 143 2e-29 seq6 114 9e-21 seq2 82.4 5e-11 >seq32 Length=411647 Score = 143 bits (158), Expect = 2e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || || || || ||||| || ||||| ||||| || || | Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | ||| || || ||||| ||||| | || |||||||| Sbjct 326121 TGACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 326180 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || |||||||| || ||| ||||||| | || ||||| ||| ||||| Sbjct 326181 ACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAA 326240 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTAA 23849 ||| |||||||| || || | || || ||||| || | || |||||| | | ||| | Sbjct 326241 CATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGGAGCTTCTGTTTA 326300 Query 23850 AGAT 23853 |||| Sbjct 326301 AGAT 326304 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || |||||||| || ||||| |||||||| | | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| ||||||| | | | || ||| ||| ||||| Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| |||||||| || || | || || ||| | || | |||||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGGA 326061 >seq6 Length=947499 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| || |||||||| || || | || ||||| | | Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | ||||||||||| | || ||||| | Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGA-TCCAAGACAAAGAAGGAATCCCTCCAGACC 442293 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || |||||||| || ||| | ||||| | | |||||| | || |||| Sbjct 442292 AACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACA 442233 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| ||||| ||||| || | ||||| || || || ||||| |||||| Sbjct 442232 ACATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGGA 442183 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||||||||| || || |||||||| || || | || ||||| | | Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | |||||| ||||| ||||| | || ||||| | Sbjct 443035 CGACACCATCGATAATGTCAAGGC-CAAAATTCAAGACAAGGAAGGAATTCCTCCAGACC 442977 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | | || ||||| || || ||| | ||||| | || || | ||| |||| Sbjct 442976 AACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACA 442917 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || || ||||| || || | || || ||| | || | |||||||| Sbjct 442916 ATATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGGA 442867 >seq2 Length=2086053 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || || ||||| || || ||||| ||||| || | Sbjct 1233527 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCC 1233586 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || ||| ||||| ||||| | || ||||||||| Sbjct 1233587 GACACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 1233646 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || | || || |||||||| || Sbjct 1233647 CAAAGATTGATCTTTGCCGGTAA 1233669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007659719268