Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 161 2e-34 seq32 159 8e-34 seq39 91.5 4e-13 seq2 89.7 1e-12 seq191 87.8 4e-12 >seq6 Length=947499 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||||||||| |||||||| |||| |||||| |||| | || | Sbjct 442877 AGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGG 442936 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||| ||||| ||||| |||||||||| ||||||||| || ||||| |||||| Sbjct 442937 CCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTCCTTCC 442996 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| || || ||| ||| ||||||||||| || | || || || || || Sbjct 442997 TTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCAAGGTA 443056 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || | ||||| | ||| | ||||||| Sbjct 443057 ATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | || || || || || ||||||| ||||| || ||||||||| Sbjct 442649 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442708 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | ||||| || || |||||||||| ||||||||| || || || |||||| Sbjct 442709 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442768 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| || || ||||||||||| || | ||| || || | ||| Sbjct 442769 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442828 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || |||||||| || | ||| | ||||||| Sbjct 442829 ATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||||| ||| | || ||||| || || ||||||| ||||| || ||||| Sbjct 442189 ACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGT 442248 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||||||||| ||||| || || |||||||||| ||||||||| || || || || Sbjct 442249 TCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCC 442308 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| ||| ||||||||||| || | || || || || Sbjct 442309 TTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAA 442368 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | || || | ||| | |||||| Sbjct 442369 GGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| ||||| | || || || || || ||||||| ||||| || ||||||||| Sbjct 442421 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442480 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || | ||||| || || |||||||||| ||||||||| || || || |||||| Sbjct 442481 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442540 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||||||||| || || ||||||||||| || | ||| || || | ||| Sbjct 442541 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442600 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || | || || | ||| | ||||||| Sbjct 442601 ATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||||||| || | || | || ||||| ||||||| ||||| || | | ||| Sbjct 441961 ACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGT 442020 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | ||||| || || |||||||||| ||| ||||| || || || || Sbjct 442021 ACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCC 442080 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || || ||| ||| || || ||||| |||| |||||| || || Sbjct 442081 TTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAA 442140 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | |||||| | || | ||||||| Sbjct 442141 AGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || || |||| |||||||| || ||||| |||||||||||||| ||||| Sbjct 443228 CTTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTT 443287 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||||| || || || | ||| || || || ||||| ||||| || || Sbjct 443288 CGCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGT 443347 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTATGGT 225721 | ||||||| || | ||||| ||||||| Sbjct 443348 TAGCGTTTTTACAAAAATTTGCA--TTATGGT 443377 >seq32 Length=411647 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | ||| || || ||||||||||||| ||||| |||| |||||| Sbjct 326283 ACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGT 326224 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| | ||||| || || |||||||| |||||||| || || ||||| || Sbjct 326223 ACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCC 326164 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| || || || |||||||| |||| ||| || || | Sbjct 326163 TTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAG 326104 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | ||| || | ||| | |||||| Sbjct 326103 AGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||| || || | ||| || || ||||||||||||| ||||| |||| || ||||| Sbjct 326052 AAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCT 325993 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | || || ||||| ||||| | || |||||| || || ||||| ||||| Sbjct 325992 TCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTC 325933 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||||||||| ||| || || |||||||| || | ||| || || | || Sbjct 325932 CTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGT 325873 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || |||||||| || | || | |||||| Sbjct 325872 AATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 102 bits (112), Expect = 2e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || || || | || |||||| || || ||||| ||||||||||||||||| || Sbjct 325705 CTTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 325646 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| |||||||| || || | ||| || || | ||||| |||||||| || Sbjct 325645 GGCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGT 325586 Query 225690 CAAAGTTTTTATGAACACTTGCATTTTATGGTTACT 225725 | |||||||| ||| | |||||| | | || ||| Sbjct 325585 GAGAGTTTTTACGAAAATCTGCATTGTTTTGTAACT 325550 >seq39 Length=348097 Score = 91.5 bits (100), Expect = 4e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | || |||||| || || ||||| |||||||||||||| || || Sbjct 169958 CTTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 169899 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| |||||||| | || || || | || || ||||| || || Sbjct 169898 AGCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGT 169839 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||| | ||||||| Sbjct 169838 CAATGTCTTGACGAAGATTTGCATT 169814 >seq2 Length=2086053 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | || |||||| || || ||||| |||||||||||||| ||||| Sbjct 1233670 CTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTT 1233611 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| |||||||||||| |||| || || || | || || || || || || Sbjct 1233610 GGCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGT 1233551 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| ||| | |||||| Sbjct 1233550 AAGGGTCTTTACGAAAATTTGCAT 1233527 >seq191 Length=17910 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||| ||||| |||||||||||||||| | ||||| || || | Sbjct 4135 TTCAGGATGACCAAAGAATCAAAATAAATGTTGATAAATCAAAGGATTACCACCTATTCT 4076 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||||||||||| |||||| ||||| | ||| ||||||| Sbjct 4075 AGGATCAAAAAAAGAAGTATTTAAATTACGATCTGTTAAAA 4035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524003446874