Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq32 82.4 6e-11 >seq6 Length=947499 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| | ||| | |||| ||| | |||||||||||| || |||||||| |||| Sbjct 442868 CCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAG 442927 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | |||||| ||||| || || ||| | ||||| |||||||||||| || Sbjct 442928 AGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGA 442987 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||| ||||| |||||| || |||| | | || || | | | Sbjct 442988 ATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACC 443047 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || | |||||||||||| || || | |||||||| |||||||||||| Sbjct 443048 TCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || |||||||| || |||| || | |||||| || ||||| || ||||| || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | |||||| ||||| || || ||| | ||||| |||||||||||| || Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 442304 ATTCCTTCTTTGTC 442317 >seq32 Length=411647 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || || || | ||| || |||| ||| | || ||||||||||| || ||||| |||| | Sbjct 326288 CCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAC 326229 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||||||||| || || ||| | ||||| | |||||| ||| ||| Sbjct 326228 AAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 326169 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG-T 101190 | ||||| ||||| || || ||| || | | | | || || | || | | | Sbjct 326168 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGG-CTTCGAC 326110 Query 101191 TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| | ||||| ||||| || || | || |||| ||||| |||||| Sbjct 326109 TTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409658448418989