Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq30 178 1e-39 >seq30 Length=447140 Score = 178 bits (196), Expect = 1e-39 Identities = 490/743 (66%), Gaps = 6/743 (1%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||||| || ||| ||||| | ||||| ||||||||||||||||||| |||| || Sbjct 100439 ACACCGGCTTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAG 100498 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || |||||||||||||| ||||| ||||| | | |||||| | |||| | || | Sbjct 100499 GAGATATTTTCCATAAACTCAAAAGGATTTTTAGTGTTGTATT-TTTTGGGTAGTTCCAA 100557 Query 4368 GCT-ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | || | | || || || |||| || || || ||| || ||| || || Sbjct 100558 GGTCATGAGTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCAT 100617 Query 4427 TCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 ||| | | | || ||||| | | |||||||| || | ||| || ||||||| Sbjct 100618 TCCGAGAAGAGAGCAT-GGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTT 100676 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 | || || | | ||| || | || |||||| | ||| | | ||| | Sbjct 100677 CGCCAATAATTTGGTATATCTTGGCGGGAGTTGGTTTGTCATCTAGAAGGCGATACATGA 100736 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 ||| |||||||||| ||| | ||||||||||| ||||| || || || || Sbjct 100737 GACAGGCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACATA 100796 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 | || | | | ||| | | || | ||| || |||| |||||||| || ||||||| Sbjct 100797 AACCATGTAATTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAGA 100856 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCT 4724 | || || |||||||| ||||| || | |||| |||||| | ||| ||| ||| Sbjct 100857 AAATCCCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTT-GTCA 100915 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||||||||| || ||||||| ||| |||||||| | || || | | | ||| Sbjct 100916 TTAATCCATTTCAAAGCCCAGTCAGCCTTTTTCTTGATACATGGGTAGTTCTCCAAAGCA 100975 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 ||||| || ||| ||||| || || ||| |||| || || || |||| Sbjct 100976 TTAAACAACTTATCCTTTTCCTTTGCATCAGTAATGTAAGCCTCAATCAGCTTCGAATAC 101035 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || |||||||| || ||||| ||| || || || | |||||| | ||| || | Sbjct 101036 ATCTCAGAATGGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTCGGGC 101095 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | || |||||| | || | ||||| || || |||| ||||| || || || Sbjct 101096 ATTTTAACTTCATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGATGCA 101155 Query 4965 GCAAAAAACGCCAAAACATGAGA 4987 |||||||| ||||| ||||| || Sbjct 101156 GCAAAAAAAGCCAATACATGTGA 101178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047148601843