Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 165 2e-35 seq32 147 5e-30 seq39 89.7 1e-12 >seq6 Length=947499 Score = 165 bits (182), Expect = 2e-35 Identities = 172/224 (77%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||||||||| | |||||| || ||||| |||||||||||||| || ||||||| Sbjct 442418 CTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTT 442477 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 |||||||| || | ||||| ||||| |||||||| || || ||||| | | ||||| Sbjct 442478 CTCCCATCCTCCAATTGCTTT--CCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTC 442535 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || |||||| | || | | |||| ||| || ||||| | Sbjct 442536 CTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCA 442595 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || || ||||| ||||||| |||||| Sbjct 442596 GGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 165 bits (182), Expect = 2e-35 Identities = 172/224 (77%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||||||||| | |||||| || ||||| |||||||||||||| || ||||||| Sbjct 442646 CTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTT 442705 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 |||||||| || | ||||| ||||| |||||||| || || ||||| | | ||||| Sbjct 442706 CTCCCATCCTCCAATTGCTTT--CCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTC 442763 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || |||||| | || | | |||| ||| || ||||| | Sbjct 442764 CTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCA 442823 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| || || | |||||| ||||||| |||||| Sbjct 442824 GGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 159 bits (176), Expect = 8e-34 Identities = 168/219 (77%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||||||||| ||||| |||||||||||||| || |||||||||||| Sbjct 442195 TCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCC 442254 Query 151949 ATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| ||||| ||||| |||||||| || || ||||| | | ||||||||| Sbjct 442255 ATCTTCTAATTGCTTT--CCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCT 442312 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| | || | | |||| || ||| || || | ||| Sbjct 442313 TTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTA 442372 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || ||||| ||||||| ||||||| Sbjct 442373 ATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| || || | || ||||| || ||||| ||||| ||||| |||| | || Sbjct 442874 CTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGTA 442933 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||||| ||||| || || |||||||| || || ||||| | | |||| Sbjct 442934 CGGCCATCTTCTAATTGCTTT--CCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTC 442991 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||||||||| |||||| | || | | |||| || ||| || || | Sbjct 442992 CTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCA 443051 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||||||| || || || || || ||||| | |||||| Sbjct 443052 AGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 114 bits (126), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || || | ||| | || || || |||||||||||||| || | | ||| | Sbjct 441965 AGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGT 442024 Query 151947 CCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || | ||||| ||||| |||||||| || |||||||| | | |||||||| Sbjct 442025 CCGTCCTCCAATTGCTTT--CCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTT 442082 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| ||||||||||| |||||| | || | |||| || || ||||| | || Sbjct 442083 CCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAG 442142 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| || || || |||||||| || || || | |||||| Sbjct 442143 TAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 >seq32 Length=411647 Score = 147 bits (162), Expect = 5e-30 Identities = 161/211 (76%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| ||||||||||||||||| |||| ||||| | ||||||||| | Sbjct 326268 CAAG-TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCCA 326210 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||| |||||||| | || || || | | ||||||||||| ||||| Sbjct 326209 ATTGCTTT--CCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTG 326152 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| || || |||||||||||||| ||||| Sbjct 326151 GATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTT 326092 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||| ||||| | ||||||| Sbjct 326091 CCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || | ||||| ||||| ||||||||||||||||| |||| ||| ||| Sbjct 326054 CTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTT 325995 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | ||| || || ||||| | || || || || | | |||||| Sbjct 325994 CTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCT 325935 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | |||| ||| || ||||||||| Sbjct 325934 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGA 325875 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||||||| || || | |||||| || || | ||||||| Sbjct 325874 GTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| ||||| | |||||| ||||| ||||||||||||||||| |||| ||||||| Sbjct 325826 CTAAGTCTAAGGACCAAATGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAAGTT 325767 Query 151944 CTCCCATCTTCTAG 151957 || ||||| || || Sbjct 325766 CTTCCATCCTCGAG 325753 >seq39 Length=348097 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | || || || || | | ||||||||||| ||||||||||| Sbjct 169957 TTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTTA 169898 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| |||| | |||||||| |||||| ||||| ||||| || || || || Sbjct 169897 GCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGTC 169838 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 | ||||| ||||||| |||||| Sbjct 169837 AATGTCTTGACGAAGATTTGCATT 169814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813837052041