Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq32 178 3e-39 seq6 170 4e-37 seq16 158 3e-33 seq39 127 4e-24 seq2 109 1e-18 >seq32 Length=411647 Score = 178 bits (196), Expect = 3e-39 Identities = 155/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||||||||||||||| | | || || ||||| || | ||| || |||||||| Sbjct 326253 TTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAA 326194 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | ||||||||| || ||||| || ||||||||||||||||| ||||| ||| | Sbjct 326193 GATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTT 326134 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| || ||||||||||| ||||| || || || || || | ||||||||| Sbjct 326133 GTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAAC 326074 Query 283088 GAATATCTGCATT 283100 ||| ||||||||| Sbjct 326073 GAAAATCTGCATT 326061 Score = 163 bits (180), Expect = 6e-35 Identities = 152/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||||||||||||||||||||| | | || | ||||| || | |||||| || ||||| Sbjct 326025 TTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAA 325966 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| || | |||||| || ||||| || ||||||||||||||||| || || ||| | Sbjct 325965 GATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 325906 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| |||||||| ||||| ||||| || || || || ||||||||||| || Sbjct 325905 GTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGAC 325846 Query 283088 GAATATCTGCATT 283100 || ||||||||| Sbjct 325845 AAAAATCTGCATT 325833 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| ||||| | |||||| || ||||| || |||||||||||||| || Sbjct 325704 TTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTG 325645 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || ||||||| || || |||||||| || || |||||||| ||||| || || Sbjct 325644 GCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGTG 325585 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||| || ||||| ||||||||| Sbjct 325584 AGAGTTTTTACGAAAATCTGCATT 325561 >seq6 Length=947499 Score = 170 bits (188), Expect = 4e-37 Identities = 153/192 (80%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| | || | |||||||| | ||| || ||||||||| Sbjct 442676 TCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAG 442735 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||||||| || || || ||||||||||||||||| ||||| ||| | Sbjct 442736 ATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTG 442795 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||||||||||||| || ||||| || || || ||||||||||| ||| Sbjct 442796 TCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACG 442855 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 442856 AAGATTTGCATT 442867 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || | || |||| ||| || || ||| ||||||||||||||||| | Sbjct 441954 AACCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTG 442013 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| || || || ||||| | ||| || ||||||||||| | | ||| ||||| | Sbjct 442014 AAAGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAG 442073 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || ||||||||||| || || || || || |||| ||||||||||| ||||| | Sbjct 442074 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCA 442133 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||| | ||| || ||||| || || | ||| || || || || |||||| Sbjct 442134 CTTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 158 bits (174), Expect = 3e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| | || | |||||||| | ||| || ||||||||| Sbjct 442448 TCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAG 442507 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||||||| || || || ||||||||||||||||| ||||| ||| | Sbjct 442508 ATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTG 442567 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||||||||||||| || ||||| || || || || | ||||| ||| Sbjct 442568 TCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACG 442627 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 442628 AAGATTTGCATT 442639 Score = 127 bits (140), Expect = 4e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||| ||||| |||||||| | || || |||||||| |||| ||| || || ||||| Sbjct 442903 TTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAA 442962 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||| | | ||||||||| ||||| || ||||||||||| || || || || || | Sbjct 442963 GATAAGTCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATT 443022 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||| ||||| || || || || || | || || || || || || | || ||||| Sbjct 443023 ATCGATGGTGTCGGATGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAAC 443082 Query 283088 GAATATCTGCATT 283100 ||| || |||||| Sbjct 443083 GAAAATTTGCATT 443095 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||||||| | || | ||||| |||| ||| || ||||||||| Sbjct 442220 TCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAG 442279 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||||||||| || || || || |||||||||||||| || || || || Sbjct 442280 ATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTA 442339 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || || || || || | || || || || || || | ||||| ||| Sbjct 442340 TCGATGGTGTCAGATGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACG 442399 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 442400 AAGATCTGCATT 442411 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| || | | |||||||| ||||| || ||||||||||| ||||| Sbjct 443229 TTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTC 443288 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | ||||| || ||||||||||| || || | ||||| ||||| || || Sbjct 443289 GCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGTT 443348 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | || || || || || |||||| Sbjct 443349 AGCGTTTTTACAAAAATTTGCATT 443372 >seq16 Length=590713 Score = 158 bits (174), Expect = 3e-33 Identities = 354/530 (67%), Gaps = 10/530 (2%) Strand=Plus/Minus Query 43789 GGAGATCTAACCGATTCTTCGAGTTTGATTCATATCATAAGCAAAGTCCGGCCGGATGAA 43848 |||||| | ||||||||||| |||| ||| | || || ||||||| || | |||| Sbjct 481882 GGAGATATGACCGATTCTTCCTGTTTAATTAAAATTATTTCAAAAGTCCAACCTGCTGAA 481823 Query 43849 ATTTACAACATGGCCGCCCAAAGTTTTGTGGGTGACAGCTTCAACCAGGCTGAAGTGACT 43908 |||||| | | || ||||| | |||| | || ||| | | | || || Sbjct 481822 ATTTACCATTTAGCTGCCCAGTCTCATGTGAAAGTTAGTTTCGAGTTGCCAGAGTATACA 481763 Query 43909 GCAAATGTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGT--------ATAG 43960 || | || |||||| |||| | |||||||||| || || ||| | || | Sbjct 481762 GCTGAAGTTGATGCTGTTGGAACTTTGCGTTTGTTGGATGCGGTTGTTGCTTGTGGATTG 481703 Query 43961 CAGGTGTGAACTCTCGGATTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGG 44020 || || || | ||| ||| ||||| ||||| || |||||||| ||||||||||| Sbjct 481702 CAAA-GTAAAGT-TCGTTTTTATCAAGCTTCGACCTCTGAGTTGTATGGAAAGGTTCAAC 481645 Query 44021 AGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGC 44080 | || |||||| | || | ||||| |||||||| | ||||| |||| ||| || ||| Sbjct 481644 AAATCCCTCAATCTGAGACAACTCCATTTTATCCAAGAAGTCCTTATGCTGTTGCAAAGT 481585 Query 44081 TATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATT 44140 | ||||| ||||||||| || |||||| | || | |||| || || | | |||| Sbjct 481584 TGTATGCTTATTGGATTGTCAAGAATTATAGAGAAGCTCATGGTATTTTTGGATCTAATG 481525 Query 44141 CGATTTGTTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCA 44200 || || ||||||||| ||| | | |||| | ||||| || || || || | Sbjct 481524 GTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCCTTCTTTCGTAACCCGAAAGATTA 481465 Query 44201 CGAAAGCGGTTGCGAATATTTTCAACGGGACAGAAAAATGCATGTATCTAGGAAACATAG 44260 | | ||||| || ||| ||| | ||||| | | ||||| ||||| | Sbjct 481464 CTCGTTCTGTTGCAAAAATTAGTCTTGGGTTCCAGGAATGCGTCTCCCTAGGCAACATCG 481405 Query 44261 ACTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGG 44310 ||||||| ||||||||||| |||| ||| ||||| || || |||||| Sbjct 481404 ACTCTAAGAGAGATTGGGGGCATGCTAAGGAATATGTGGAGGCTATGTGG 481355 >seq39 Length=348097 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || ||||||||||| || | |||||| || ||||| || ||||||||||| || || Sbjct 169957 TTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTTA 169898 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| | ||||||||||| ||||| || || || || || || |||||||| ||| Sbjct 169897 GCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGTC 169838 Query 283077 AAAGTCTTAACGAATATCTGCATTTTCATATACAAATA 283114 || ||||| ||||| || |||||| || | || ||||| Sbjct 169837 AATGTCTTGACGAAGATTTGCATTATCGTCTATAAATA 169800 >seq2 Length=2086053 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||||||||| | |||||| || ||||| || ||||||||||| ||||| Sbjct 1233669 TTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTG 1233610 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||| ||||| || || || || ||||| || || || ||||| || Sbjct 1233609 GCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGTA 1233550 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || ||||| Sbjct 1233549 AGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732883256034