Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 122 6e-23 seq32 113 3e-20 seq2 95.1 9e-15 >seq6 Length=947499 Score = 122 bits (134), Expect = 6e-23 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| ||||| | |||| ||||| || |||||||||||||||||| || Sbjct 442408 CATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTC 442467 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||| | | | || |||| ||||| ||||||||||| | | || || ||| Sbjct 442468 ACTTAAAGTT--CTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCT 442525 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | |||||||| || ||||| |||| | ||| | |||||||||| | Sbjct 442526 GGAGGGATTCCTTCCTTGTCTTGGATCTTA-GCTTTGACGTTGTCGATGGTGTCGGAAGC 442584 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || || ||||| || |||||||| |||||||||||||| Sbjct 442585 TTCGACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 113 bits (124), Expect = 3e-20 Identities = 170/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| ||||| | |||| ||||| || |||||||||||||||||| Sbjct 442633 TTGCATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTA 442692 Query 44164 AT--CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 | | |||| | | | || |||| ||||| ||||||||||| | | || || Sbjct 442693 GTCACTTAAAGTT--CTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGG 442750 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGC 44280 |||| ||| | |||||||| || ||||| |||| | ||| | |||||||||| Sbjct 442751 TCTGGAGGGATTCCTTCCTTGTCTTGGATCTT-AGCTTTGACGTTGTCGATGGTGTCGGA 442809 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| || || || ||||| || | ||||| |||||||||||||| Sbjct 442810 AGCTTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || |||||| |||| ||||| || |||||||||||||||||| Sbjct 442177 TTGCATTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTA 442236 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||| | | | || || | ||||| ||||||||||| | | || || Sbjct 442237 GTCACTTAAAGTT--CTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGG 442294 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| ||| | ||||| || || ||||| ||| | | | |||||||| | Sbjct 442295 TCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAT 442354 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||| ||||| || ||||| || |||||||| |||||||| ||||| Sbjct 442355 GCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTG-AAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||||||| |||| || ||| || | ||||||||||||||||| || | || || Sbjct 441965 AGTCTCAGAACCAAATGCAAGGTTGAT-TCCTTTTGGATGTTGTAGTCTGAAAGAGTACG 442023 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 |||| |||| ||||| ||||||||||| | | ||||| |||| ||| | ||||| Sbjct 442024 TCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTC 442083 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| || || || ||| | | | || ||||| | || |||||| |||| || Sbjct 442084 CTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGT 442143 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||| ||||| || || || || |||||||| Sbjct 442144 AATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 >seq32 Length=411647 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| |||| |||||| || || |||||||||||||| |||| | ||| Sbjct 326279 AGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGC 326220 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || |||| ||||| ||||||||||| | ||| || ||||||| || | |||||| Sbjct 326219 CCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCC 326160 Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 || || ||||| |||| | ||| | |||||||| | || ||| || || | || Sbjct 326159 TTGTCTTGGATCTT-GGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGT 326101 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || || || ||||| ||||| || ||||| Sbjct 326100 AATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| ||||| | |||| |||||| || || |||||||||||||| || Sbjct 326064 CATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTC 326005 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || | ||| | | || |||| || || || |||||||| || | || |||||| Sbjct 326004 GGATAAGGTT--CTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCT 325947 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | |||||||| || ||||| ||| | | | |||||||| | | | Sbjct 325946 GGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCT 325887 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| || ||||| || | ||||| || || || ||||| Sbjct 325886 TCAACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 >seq2 Length=2086053 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| | ||| |||||||||||||| | || ||||||| ||| | |||||||| || Sbjct 1233676 CAGATACTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG 1233617 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || | |||||||||| || || ||||| | ||||| || || Sbjct 1233616 AATCTTGGCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTT 1233557 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || |||||||| ||||| |||||||||| Sbjct 1233556 ACCGGTAAGGGTCTTTACGAAAATTTGCATGA 1233525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988333542607