Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 181 3e-40 seq32 167 6e-36 seq2 122 2e-22 >seq6 Length=947499 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||||||||| ||||| || || || | || |||||| ||| ||| Sbjct 442179 CAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTCGGAC 442120 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || ||||| ||||| |||||||||||||| ||||||||| Sbjct 442119 ACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAGCAA 442060 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| |||||||| || | || || ||| | |||||| | || || ||| || Sbjct 442059 AGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAACATC 442000 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| |||||||| ||||| | ||| ||||||| Sbjct 441999 CAAAAGGAATCAACCTTGCATTTGGTTCTGAGACT 441965 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || |||||||| |||||||| || || ||| || ||| Sbjct 442635 CAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCGAC 442576 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 442575 ACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAACAA 442516 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| |||||||| || | || ||||| || ||| | || || ||| || Sbjct 442515 AGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACATC 442456 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || ||| | || | ||||||||| Sbjct 442455 CAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGA 442417 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || |||||||| |||||||| || || ||| || ||| Sbjct 442863 CAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCGAC 442804 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 442803 ACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAACAA 442744 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| |||||||| || | || ||||| || ||| | || || ||| || Sbjct 442743 AGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACATC 442684 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || ||| | || | ||||||||| Sbjct 442683 CAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGA 442645 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || |||||||| || ||| | ||||| || || ||| Sbjct 443091 CAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCCGAC 443032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 443031 ACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAA 442972 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| || ||||| || | |||||||| | || || |||| || || || Sbjct 442971 AGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAATATC 442912 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||||||||| || || | ||| | ||||||||| Sbjct 442911 CAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGA 442873 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || |||||||| || ||| | ||||| || || ||| Sbjct 442407 CAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCTGAC 442348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || |||||||||||||||||||| ||||| ||| Sbjct 442347 ACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAACAA 442288 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||| |||||||| || | |||||||| || ||| | || || ||| || Sbjct 442287 AGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAACATC 442228 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| || ||||| || ||| | || |||||| Sbjct 442227 CAAAAGGAGTCAACTCTTCATTTGGTCTTGAGA 442195 >seq32 Length=411647 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || ||||| || || || || || ||| ||| ||| Sbjct 326065 CAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCTGAC 326124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||||||| ||||| || ||||| |||||||| || || || || ||| Sbjct 326125 ACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAACAA 326184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| |||||||| || | |||||||| | ||| | |||| || ||| || Sbjct 326185 CGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAACATC 326244 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| || || || | ||||||||||| Sbjct 326245 CAAAAAGAATCTACCCTTCACTTGGTTTTGAGACT 326279 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | ||||||||||| || || || || || ||| || ||| Sbjct 325837 CAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTGAC 325896 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| || ||||| |||||||| || || || || ||| Sbjct 325897 ACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAACAA 325956 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | ||||||||||| || | |||| || ||| || Sbjct 325957 AGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAACATC 326016 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||| | ||||| ||| Sbjct 326017 CAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGA 326055 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||||||||| || || || ||||| || ||||| ||| || || Sbjct 325565 CAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTCTGAT 325624 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || || ||||| |||||||| ||||| || || ||| Sbjct 325625 ACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAACAA 325684 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 325685 AGATTGATTTTTGCAGGTAA 325704 >seq2 Length=2086053 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || ||||| || ||||||||||| || ||| ||| Sbjct 1233530 CAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCCGAC 1233589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||||||| ||||| |||||||| ||||| || || ||| Sbjct 1233590 ACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAACAA 1233649 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | ||||| ||||| || Sbjct 1233650 AGATTGATCTTTGCCGGTAA 1233669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723935858374