Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3755 156 4e-33 >seq3755 Length=20876 Score = 156 bits (172), Expect = 4e-33 Identities = 236/333 (71%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059 ||||| |||||| || ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 10514 ATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATC 10455 Query 17060 GCGGCGAA-CGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 | ||||| | |||| ||||||||||| || ||||||| || || || | || ||||| Sbjct 10454 GACGCGAAACTACCC-GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTC 10396 Query 17119 GGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTAT 17178 | || |||||| | ||| | |||||||||| |||| | ||||| | | | Sbjct 10395 GCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAAC 10336 Query 17179 GCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATA 17238 |||| | |||||||| || || || | | |||||||| | ||| || || Sbjct 10335 GCAAGGTAAAGTTTCTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTA 10276 Query 17239 CGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCC 17298 || |||||||||| | ||||||||||| || || || || || || || ||||| || Sbjct 10275 GGTTTCGATGAGTAAGGAATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCC 10216 Query 17299 GTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 ||||| || || ||||||| | ||| ||||| Sbjct 10215 ATAAAAACAACGAGCTTCCGTAACTTGCACTTC 10183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517141028135160