Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3755 120 4e-22 seq6174 96.9 4e-15 seq4713 95.1 1e-14 >seq3755 Length=20876 Score = 120 bits (132), Expect = 4e-22 Identities = 228/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 ||||| | |||||||| ||||| || ||||| | |||||| || ||||| || || Sbjct 10499 AACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCC 10440 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 |||||||| || ||||| || || || || || | | | ||| || | || || | Sbjct 10439 GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAA--CGTCGATT 10382 Query 24306 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 24360 | | ||||| || |||||| | || ||||||| || ||||| | || | Sbjct 10381 GTTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTT 10322 Query 24361 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--A 24418 |||||||||| || |||| | |||||| ||| || || || || || | | Sbjct 10321 CTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTA 10262 Query 24419 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCT 24478 | || ||||||||| ||||| || ||||| || || |||||||| || || ||||| | Sbjct 10261 AGGA--ATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACG 10204 Query 24479 AGCCTCGGTAATCTGTACTTCTATACAAAATCG 24511 ||| || |||| || |||||| | ||||||| Sbjct 10203 AGCTTCCGTAACTTGCACTTCTTGAGAAAATCG 10171 >seq6174 Length=13620 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 |||||| |||||||||||||| |||| || || |||||||| || |||||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || |||||||||||||||||||| || || || || ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 >seq4713 Length=17327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 54707 ATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACT 54766 || |||||| ||||||| ||| |||||| || ||| | ||||||| ||| ||| Sbjct 15012 ATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAACT 15071 Query 54767 TCACTAAATAGtttt-tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 54825 | | ||| ||||| |||||||||||||||| ||| || ||||| || ||||||| Sbjct 15072 TG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACAGCTATCCTGGCGGCTAA 15130 Query 54826 AATGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGTCAGAGTGT 54884 | || ||||| |||||| || || ||| || || || ||||||| | || ||| Sbjct 15131 TGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGTTGT 15189 Query 54885 CCAATTCTACCGTTGTTACTCCATTATA 54912 | | ||| || |||||||| || || || Sbjct 15190 CTAGTTCAACGGTTGTTACACCTTTGTA 15217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||| | |||||||||||| |||| || || |||||||| || |||||||| | Sbjct 2281 TACTTTGAGTTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 2340 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || || |||||||||||||||||||| || || || || ||||| |||| | |||| Sbjct 2341 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593257480403760