Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3755 102 7e-17 seq2525 96.9 3e-15 seq4826 89.7 4e-13 >seq3755 Length=20876 Score = 102 bits (112), Expect = 7e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 44765 CTTTTGAATGGTTTCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAG 44824 ||||| |||| | | || | | | || ||||| | | || || ||||||| |||| Sbjct 10306 CTTTTCAATGCTATAGAAACTTTACCTTGCGTTCAAAAGAAAGCTCAATGGGCTTTGAAA 10365 Query 44825 TATATTGACGATGAAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAA 44884 | |||| |||| || | || || | |||||| ||||| || |||||| |||||| Sbjct 10366 TGGATTGCCGATAAACAATCGACGTTCGGCGAACGTTTGGTGGCTTTCGCCGCCGTCGAA 10425 Query 44885 GGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGGAGTGATG 44944 || | ||||||||||| ||||| ||| |||| |||| | |||| ||| | ||| Sbjct 10426 GGCATATTCTTTTCGGGTAGTTTCGCGTCGATTTTTTGGTTAAAAAAACGGGGCCTCATG 10485 Query 44945 CCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGA 44985 ||||| ||||||| || ||||| | || ||||| || || Sbjct 10486 CCCGGCTTGACGTTCAGTAACGAGCTTATATCGAGGGATGA 10526 >seq2525 Length=27391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| | || | |||||| |||||||| || ||||| || |||||| ||| || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| ||||||| |||||| || | || | ||||||||||||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| ||||| ||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 >seq4826 Length=16944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| |||| ||||||||| || | || ||||| |||||||||||||||||| Sbjct 6822 CCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCG--G 6879 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 |||| | ||| || || | |||||| || ||| | || ||||| || ||||| |||| Sbjct 6880 ATAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAG 6939 Query 118630 GTATGCC 118636 | ||||| Sbjct 6940 GGATGCC 6946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433499747619604