Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3755 168 6e-37 >seq3755 Length=20876 Score = 168 bits (186), Expect = 6e-37 Identities = 261/366 (71%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 16240 AAAATCACAATGCAATC-CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||| ||| |||| | || | || ||||| ||| | |||||| || || | || | Sbjct 10546 AAATTCAAAATGAACTCACCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGG 10487 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| || || |||||||| | |||||| || | || || ||| ||||||||||| | Sbjct 10486 GCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGC 10427 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtt-tttactttctatc 16417 |||| || ||||| || || ||||| || || ||| ||| || ||| |||| | ||| Sbjct 10426 CTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAACG-TCGATTGTTTATCGGCAATC 10368 Query 16418 cattttttagcccaatttgctttttgtttAACAC-AGTTCATGTTCTCTATTGCATTAAA 16476 ||||| |||||| | ||||| | || ||| | || | | ||| ||||| ||||| || Sbjct 10367 CATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTT-TCTATAGCATTGAA 10309 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | || || |||||| | ||| ||| || || || || ||||| ||||||||| Sbjct 10308 AAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGAATACATTTC 10249 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||| ||||| || ||||| || ||||| |||||||| || | |||||| | | ||| Sbjct 10248 GGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTAACTTG 10189 Query 16597 TACTTC 16602 ||||| Sbjct 10188 CACTTC 10183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||||||||| || | |||| |||||||||||||| |||||||| ||||| | Sbjct 11517 TTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAACGAAATGTG 11458 Query 16003 TTCCATAAAATCAAAAGGATT 16023 ||||||||||| || ||||| Sbjct 11457 CTCCATAAAATCGAAGGGATT 11437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462150448588200