Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3755 194 1e-44 seq6174 109 5e-19 seq4713 107 2e-18 seq2525 100 3e-16 seq391 95.1 1e-14 seq4826 86.0 6e-12 >seq3755 Length=20876 Score = 194 bits (214), Expect = 1e-44 Identities = 268/371 (72%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||||| ||||||| |||||||||||||| ||||| || | || ||||| || ||||| Sbjct 10164 GGTCGGTCGATTTTCTCAAGAAGTGCAAGTTACGGAAGCTCGTTGTTTTTATGGCTTTCA 10223 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || || ||||| | ||||| ||||||||||| |||||||||| || ||| | Sbjct 10224 AATTGCAATCGAAAATATCCATTCCGAAATGTATTCCTTACTCATCGAAACCTACATTCG 10283 Query 57857 GGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCA 57915 || || ||| ||| | || ||||| || || ||||| | || ||| || | Sbjct 10284 CGATCCCGTCGAAAAAGATCATCTTTTCAATGCTATAGAAACTTTACCTTGCGTTCAA-A 10342 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGA 57970 |||| || | ||| | | |||||||| | ||| || | ||||||| ||| Sbjct 10343 AGAAAGCTCAATGGGCTTTGAAATGGATTGCCGATAAA----CAAT-CGACGTTCGGCGA 10397 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | | || ||||||||||||||||| |||||||||||||| || || ||| | || Sbjct 10398 ACGTTTGGTGGCTTTCGCCGCCGTCGAAGGCATATTCTTTTCGGGTAGTTTCGCGTCGAT 10457 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 |||||| | || ||||| ||||| ||||||||| ||||||| || |||||| | ||||| Sbjct 10458 TTTTTGGTTAAAAAAACGGGGCCTCATGCCCGGCTTGACGTTCAGTAACGAGCTTATATC 10517 Query 58091 GCGCGACGAGG 58101 | | || |||| Sbjct 10518 GAGGGATGAGG 10528 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 57506 CGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCC 57565 ||| ||||| | |||| || ||||| ||| |||| ||||| |||||||| |||||||| Sbjct 9403 CGACGAACCTTTATTGCGCGAAAATCCGCGTCGATTCGTCATTTTTCCGATCGAATATCC 9462 Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 ||||||||| | | ||||| || || || || ||||||||||| ||||||||||| Sbjct 9463 CGACATTTGGGAATTTTACAAGAAAGCGGAGGCTTCGTTTTGGACAGTCGAAGAAGT 9519 >seq6174 Length=13620 Score = 109 bits (120), Expect = 5e-19 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 22453 GTTCACC-ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||||| ||||| || || || ||||| || || || ||||| || |||||| ||| Sbjct 12267 GTTCACATACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACG 12208 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 ||||||| ||||| || ||||||| || ||||| ||||| || || ||||||||||| | Sbjct 12207 GTTCGAATGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGCTA 12148 Query 22572 ACAGTAGCGAGTTTC 22586 | |||| |||||||| Sbjct 12147 AGAGTAACGAGTTTC 12133 >seq4713 Length=17327 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 23287 GTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAAC 23346 ||||| ||| || || ||| | || |||||||||| ||| | ||| | |||||| Sbjct 11646 GTCGGGCAGACCCGGACATTCGCTTGGGCACATGAGACACCAGTCTTCGTCGTCTTCAAC 11705 Query 23347 GCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTC 23406 |||| ||| || | ||| || | ||||| |||||| | || ||||| || | || || Sbjct 11706 GCGTTGCATGAACAAATCTGGCACCCATAAAGCGTAAATGAGGTCGCGCGCTCTCAAGTC 11765 Query 23407 CTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTC 23466 ||||| || || |||| ||||| ||||||||||| | | ||| || ||||||||||| Sbjct 11766 GTCTTTACCTGTTCTCTTGTTCAATTCCAAAAAGTCGAGGATGTCTGCGTGCCACGGCTC 11825 Query 23467 GAGGTAAAC 23475 | ||| || Sbjct 11826 CAAGTATAC 11834 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 || |||||||| ||||| |||| |||||||| ||||| |||| ||| ||||| || Sbjct 3098 ACTTCGTCTTTTGACGTAAACTCGACAATTTCCGTACAAGAATTGGAACATTTTATGGTT 3157 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || ||||| |||| ||| ||| |||||| | ||| ||||| ||||||||||| ||| Sbjct 3158 CCTAAATTTTTCTGATTGGATTTCGAATTGCAGGCATCTTTGTAAAGCATGTACGGAGTG 3217 Query 23168 CCCGTCTCG 23176 || || ||| Sbjct 3218 CCTGTTTCG 3226 >seq2525 Length=27391 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || ||||| |||||||||||||| | || || || ||||| Sbjct 3759 ATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTCG 3700 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || || || || ||||| |||||| | |||||||| || Sbjct 3699 GACACGATCGAAAACGTAAAGACCAAG-ATTCAAGACAAAGAAGGCATCCCGCCCGATCA 3641 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 |||||| | || || ||||| || Sbjct 3640 ACAGCGTTTGATTTTTGCTGGTAA 3617 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || |||||||||||||| || || || || || |||||||| || || | || || ||| Sbjct 5690 TCCAACATGCAAATTTTTGTGAAAACGCTCACCGGCAAAACAATTACGCTTGAGGTGGAA 5631 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 || || || | |||||| ||||| || || || || || |||||| | ||||| Sbjct 5630 CCTTCGGATACCATCGAAAACGTCAAGACCAAG-ATCCAAGATAAAGAAGGCATCCCGCC 5572 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGG 31332 ||| || |||||||| |||||||| || Sbjct 5571 CGATCAACAGCGTCTGATATTCGCGGG 5545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| ||||| |||||||| | || |||||||| || Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| | ||| ||||||||||| | ||||| || || Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 31313 CAGCGTCTAATATTCGCTGG 31332 ||||| | || ||||| || Sbjct 2846 CAGCGATTGATCTTCGCCGG 2827 >seq391 Length=62077 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || ||||| || ||||| || || | || || |||||||| Sbjct 23629 ATGCAAATTTTTGTCAAAACGCTGACGGGAAAAACTATAACGCTGGAAGTCGAACCGTCG 23688 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| ||||| ||| | ||| |||||| |||||| | || || || || Sbjct 23689 GACACGATCGAAAACGTCAAGACA-AAAATCCAGGACAAAGAAGGCATTCCACCAGATCA 23747 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 ||| ||| |||| |||||||| Sbjct 23748 GCAACGTTTAATCTTCGCTGG 23768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || ||| |||| ||||| ||||||||| | || || |||||||| Sbjct 22367 CATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTC 22426 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || ||| || || ||||| || ||| | || || || || Sbjct 22427 CGATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCA 22486 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 || ||| |||||||||| || || Sbjct 22487 ACAACGTTTAATATTCGCCGGTAA 22510 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || | || ||||| |||||||| | || || ||||||||| Sbjct 24271 ATGCAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTCC 24330 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || ||| ||||| ||||| | || || || || Sbjct 24331 GACACAATTGAAAATGTTAAAACGAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 24390 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || || || || |||||||| || Sbjct 24391 CAACGGCTGATCTTCGCTGGTAA 24413 >seq4826 Length=16944 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/112 (79%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 31293 AAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC---T 31349 ||||| | || || || || || |||||||| ||||| || ||||||||||||||| Sbjct 6948 AAGGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGAC 6889 Query 31350 CTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || | |||| |||||| ||||||||||| || |||||||||||| |||| Sbjct 6888 GTACG-CTAT--CCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGT 6840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445417938833040