Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3755 125 7e-24 seq4713 107 2e-18 seq6174 95.1 1e-14 >seq3755 Length=20876 Score = 125 bits (138), Expect = 7e-24 Identities = 220/318 (69%), Gaps = 3/318 (1%) Strand=Plus/Minus Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 ||| || || ||| || || || |||||||| | || |||||||||| |||||| || Sbjct 10515 TATAAGCTCGTTACTGAACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAAT 10456 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | || || ||| ||||||||||| || || || || || || || || | | ||| Sbjct 10455 CGACGCGAAACTACCCGAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTC 10396 Query 11785 TCCATATACC--TTGTTGCTAGATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 || | | ||||| | | | ||||||| ||||| | ||||||||||| || Sbjct 10395 GCCGAACGTCGATTGTTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAAC 10336 Query 11842 GCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 ||| | ||||||||||| || || | ||| |||||| | ||| | | || Sbjct 10335 GCAAGGTAAAGTTTCTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTA 10276 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 || || || | ||| ||||||||| ||||| |||||||| || || |||||||| || Sbjct 10275 GGTTTCGATGAGTAAGGAATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCC 10216 Query 11962 ATAGAAACATCGTGCCTC 11979 ||| ||||| || || || Sbjct 10215 ATAAAAACAACGAGCTTC 10198 >seq4713 Length=17327 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 |||||||||| |||| | ||| |||| || || ||| | | || || ||||||| Sbjct 2538 CCACATATCAAATTGCAAAATGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATAAGT 2597 Query 37392 TCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 ||| | ||| | ||||||||||||| ||| | || |||||||| ||||||||||| Sbjct 2598 GCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTTTCGAA 2657 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAA 37511 ||||| | || ||| ||||||| || || | || | || | ||||| Sbjct 2658 AATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGAATAAA 2717 Query 37512 CACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 |||| |||||||| |||||||| || || ||||||| ||| ||||| ||||| Sbjct 2718 TGCATCGGCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCT 2774 >seq6174 Length=13620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 ||||||||| | || | | | |||| || || ||| | | || || ||||||| Sbjct 12003 CCACATATCGAACTGCAAAGTGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATAAGT 11944 Query 37392 TCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 ||| | ||| | ||||||||||||| ||| | || ||||||| ||||||||||| Sbjct 11943 GCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAATAAATTGTTTCGAA 11884 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAA 37511 ||||| | || ||| ||||||| || || | || | || | ||||| Sbjct 11883 AATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGGATAAA 11824 Query 37512 CACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 |||| ||||||||||||||||| || || ||||||| ||| ||||| ||||| Sbjct 11823 TGCATCGGCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCT 11767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468158548307280