Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3755 116 5e-21 seq4713 104 3e-17 seq6174 96.9 5e-15 >seq3755 Length=20876 Score = 116 bits (128), Expect = 5e-21 Identities = 228/332 (69%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 ||||| | |||||||| ||||| || ||||| | |||||| || ||||| || || Sbjct 10499 AACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCC 10440 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 |||||||| || ||||| || || || || || | | | || || ||| | || Sbjct 10439 GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCG-AACGTCGATTG 10381 Query 36329 TC-ATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 36384 | || ||||| || |||||| | || ||||||| || ||||| | || || Sbjct 10380 TTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTC 10321 Query 36385 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AA 36442 ||||||||| || |||| | |||||| ||| || || || || || | || Sbjct 10320 TATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTAA 10261 Query 36443 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA 36502 || ||||||||| ||||| || ||||| || || |||||||| || || ||||| | | Sbjct 10260 GGA--ATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGA 10203 Query 36503 GCCTCGGTAATCTGTACTTCTGTACAAAATCG 36534 || || |||| || |||||| | ||||||| Sbjct 10202 GCTTCCGTAACTTGCACTTCTTGAGAAAATCG 10171 >seq4713 Length=17327 Score = 104 bits (114), Expect = 3e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 66738 ATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACT 66797 || |||||| ||||||| ||| |||||| || ||| | | ||||||| ||| ||| Sbjct 15012 ATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAACT 15071 Query 66798 TCACTAAATAGtttt-tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAT 66856 | | ||| ||||| |||||||||||||||| ||| || ||||| || ||||||| Sbjct 15072 TG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACAGCTATCCTGGCGGCTAA 15130 Query 66857 AATGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGT 66915 | || ||||| |||||| || || ||| || || || ||||||| |||| ||| Sbjct 15131 TGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGTTGT 15189 Query 66916 CCAATTCTACCGTTGTTACTCCATTATA 66943 | | ||| || |||||||| || || || Sbjct 15190 CTAGTTCAACGGTTGTTACACCTTTGTA 15217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||||| | |||||||||||| |||| || || |||||||| || |||||||| | Sbjct 2281 TACTTTGAGTTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 2340 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 65298 || || |||||||||||||||||||| || || || || ||||| |||| | |||| Sbjct 2341 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATA 2396 >seq6174 Length=13620 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 |||||| |||||||||||||| |||| || || |||||||| || |||||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 || || |||||||||||||||||||| || || || || ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657658298095080