Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq391 109 5e-19 seq2525 104 2e-17 seq3755 91.5 1e-13 seq4826 87.8 2e-12 >seq391 Length=62077 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| ||||||| ||||| ||||| || || || ||||||||||| || |||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTC-TTGGATTTT 24355 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||||| | | ||| | |||||||| || || || || | || | ||||||||| || Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| |||||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCAT 24271 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| |||||| |||||||||||| || || ||||||||||| || ||| |||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCC-TGAATTTT 22738 Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||||| | | ||| | ||||| | |||||||| || | || | || || || || Sbjct 22737 TGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGT 22678 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||||||||| ||||| || ||||| Sbjct 22677 CAACGTTTTGACGAAAATCTGCAT 22654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || | || | |||||| ||||| ||||||||||| |||||||| ||| | || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTC-TTGAATCTT 22452 Query 139682 TG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||||| | || | || |||| || ||||| || | ||| | ||||||||| || Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| ||||| |||||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| | |||| ||||| ||||| || |||||||||||||| || ||| || Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | ||| | || |||| ||||| ||||| | || | || || || ||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| |||||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 >seq2525 Length=27391 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | |||| ||| || |||||||| || |||||||||||||| ||| | || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTC-TTGAATCTT 3675 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || |||| | ||| | ||||| | ||||| || || | || | ||| |||||||| Sbjct 3676 GGTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGT 3735 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||||||||| |||||||| Sbjct 3736 CAGGGTTTTTACGAAAATTTGCAT 3759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| || | |||| ||||||||||||||| || || || |||||||| ||| |||| Sbjct 4428 TACCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTC-TTGAATTTTC 4486 Query 139683 GTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||||| | | || | || |||| ||||| || || | || | ||| ||||| ||| Sbjct 4487 GTTTTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTC 4546 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 |||||||| || || ||||||||| Sbjct 4547 AACGTTTTGACAAAAATTTGCATA 4570 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||| || |||||| || || ||||| || || || ||||| ||||| |||||| Sbjct 2826 ACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGT 2885 Query 139684 TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 ||| | | ||| | ||||| | ||| || || || | || | ||||||||||||||| Sbjct 2886 TTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAA 2945 Query 139744 CGTTTTTACGAATATTTGCATA 139765 ||||| ||||| ||||||||| Sbjct 2946 AGTTTTCACGAAGATTTGCATA 2967 >seq3755 Length=20876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 |||| ||| | || | | | || || || | || || | | | ||||| |||||||||| Sbjct 10310 TCAATGCTATAGAAACTTTACCTTGCGTTCAAAAGAAAGCTCAATGGGCTTTGAAATGGA 10369 Query 52592 T---CGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648 | ||| || || || | || || | ||||||| |||| || || || || |||| Sbjct 10370 TTGCCGATAA--AC-AATCGACGTTCGGCGAACGTTTGGTGGCTTTCGCCGCCGTCGAAG 10426 Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGC 52708 | | || |||||||||||||| ||| | || |||| | |||| |||| | |||| Sbjct 10427 GCATATTCTTTTCGGGTAGTTTCGCGTCGATTTTTTGGTTAAAAAAACGGGGCCTCATGC 10486 Query 52709 CCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGA 52748 ||||| | ||||| || |||||| | |||||| | || || Sbjct 10487 CCGGCTTGACGTTCAGTAACGAGCTTATATCGAGGGATGA 10526 >seq4826 Length=16944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || || ||||| || || |||| || ||||| ||||||||||| |||||| Sbjct 6821 GCCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGA 6880 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| | ||||||||| || | || |||||||| ||||| ||||| Sbjct 6881 TAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGG 6940 Query 139657 TATGCCTT 139664 ||||||| Sbjct 6941 GATGCCTT 6948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495676220570400