Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4713 123 4e-23 seq6174 120 4e-22 >seq4713 Length=17327 Score = 123 bits (136), Expect = 4e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCA 79308 |||||||| | |||| |||| | ||| || | ||| | || ||| ||| |||||| Sbjct 2533 ACATTCCACATATCAAATTGCAAAATGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCA 2592 Query 79309 TAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTT 79368 |||| || |||||||| | ||| ||||| || || || ||| | |||||||| ||| Sbjct 2593 TAAGTGCCGAACTTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTT 2652 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA 79428 |||||||| | ||| || | | |||||| | ||||| || || | | ||| Sbjct 2653 TCGAAAATTTCCTTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGA 2712 Query 79429 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAA 79488 ||||| || || || || ||||||||||| || ||||| |||| ||| | ||||| || Sbjct 2713 ATAAATGCATCGGCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGAT 2772 Query 79489 ATTTCAGC 79496 ||||||| Sbjct 2773 CTTTCAGC 2780 Score = 113 bits (124), Expect = 6e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 80617 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 80676 || |||||| ||||||| ||| |||||| || ||| | | ||||||| ||| ||| Sbjct 15012 ATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAACT 15071 Query 80677 TCACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAA 80735 | | ||| ||||| |||||||| ||||||| ||| || ||||| ||||||||||| Sbjct 15072 TG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACAGCTATCCTGGCGGCTAA 15130 Query 80736 AATGGCATAATCTGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGT 80794 | || |||||||||||| || || ||| || || || ||||||| |||| ||| Sbjct 15131 TGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGTTGT 15189 Query 80795 CCAATTCTACCGTTGTTACTCCATTATA 80822 | | ||| || |||||||| || || || Sbjct 15190 CTAGTTCAACGGTTGTTACACCTTTGTA 15217 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/119 (77%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||| | |||||||||||| |||| || || |||||||| || || ||||| | Sbjct 2281 TACTTTGAGTTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 2340 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATA 79177 ||||| |||||||||||||||||||| || || ||||| ||||| |||| | |||| Sbjct 2341 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATA 2396 >seq6174 Length=13620 Score = 120 bits (132), Expect = 4e-22 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 80617 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 80676 || |||||| ||||||| || ||||| || ||| | ||||||| ||| ||| Sbjct 2171 ATCATCGGACAATGTTTATTCGTTCGGGGATTTACCCAGTCATACAAATCCTGCATAACT 2112 Query 80677 TCACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAA 80735 | | ||| ||||| ||||||||||| |||| ||| || ||||| ||||||||||| Sbjct 2111 TG-CGAAAAGGTTTTCTTTGTTTCCTTATGTAAATTACTGACAGCTATCCTGGCGGCTAA 2053 Query 80736 AATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTC 80795 | |||||||||||||||| |||||| || || || |||| || |||| |||| Sbjct 2052 TGTTGCATAATCTGGATGTTTTGTAGTCATCGTAGCAGCGGTTTCAGCAGCCAAGTTGTC 1993 Query 80796 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 || ||| || |||||||| || || || || || | || ||| || Sbjct 1992 CAGTTCAACGGTTGTTACGCCTTTGTAGATGCCCTCGACAACTTT 1948 Score = 109 bits (120), Expect = 8e-19 Identities = 202/296 (68%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 79204 ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC---AGACGGGACAACATTCCAAAGA 79260 ||||| || ||| || | ||||||||||| | || ||| |||||||| | | Sbjct 12056 ATTTTGTCACGTAGTGAATTCCAATCCCAAATTTTTAAAGTCGGTTTTACATTCCACATA 11997 Query 79261 TCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCC 79320 || | || | | | || | ||| | || ||| ||| |||||||||| || | Sbjct 11996 TCGAACTGCAAAGTGCCTTGGCTAATGGGGGAACCTTCGTAAGTTTCATAAGTGCCGAAC 11937 Query 79321 TTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTC 79380 ||||||| | ||| ||||| || || || ||||| |||||||| ||||||||||| | | Sbjct 11936 TTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAATAAATTGTTTCGAAAATTTCC 11877 Query 79381 TTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 79440 || || | | |||||| | ||||| || || | | || ||||| || || Sbjct 11876 TTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGGATAAATGCATCG 11817 Query 79441 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGC 79496 || || || |||||||| || ||||| |||| ||| | ||||| || ||||||| Sbjct 11816 GCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 11761 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 |||||| |||||||||||||| |||| || || |||||||| || || ||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 ||||| |||||||||||||||||||| || || ||||| ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717707320300680