Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6174 114 2e-20 seq4713 104 3e-17 >seq6174 Length=13620 Score = 114 bits (126), Expect = 2e-20 Identities = 162/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 72759 || |||||| ||||||| || ||||| || ||| | ||||||| ||| ||| Sbjct 2171 ATCATCGGACAATGTTTATTCGTTCGGGGATTTACCCAGTCATACAAATCCTGCATAACT 2112 Query 72760 TCACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818 | | ||| ||||| ||||||||||| |||| ||| || ||||| |||||||||| Sbjct 2111 TG-CGAAAAGGTTTTCTTTGTTTCCTTATGTAAATTACTGACAGCTATCCTGGCGGCTAA 2053 Query 72819 AATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTC 72878 | |||||||||||||||| |||||| || || || |||| || |||| |||| Sbjct 2052 TGTTGCATAATCTGGATGTTTTGTAGTCATCGTAGCAGCGGTTTCAGCAGCCAAGTTGTC 1993 Query 72879 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 || ||| || |||||||| || || || || || | || ||| || Sbjct 1992 CAGTTCAACGGTTGTTACGCCTTTGTAGATGCCCTCGACAACTTT 1948 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 |||||| |||||||||||||| |||| || || |||||||| || |||||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 ||| || |||||||||||||||||||| || || || || ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 71404 TTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTC 71463 ||||||| ||||| ||||| || || || |||||||||||||| ||||||||||| | | Sbjct 11936 TTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTCCATAATAAATTGTTTCGAAAATTTCC 11877 Query 71464 TTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 71523 || || | | ||||| | ||||| || || | | || ||||| || || Sbjct 11876 TTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGGATAAATGCATCG 11817 Query 71524 GCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGC 71579 || || || ||||| || || ||||| |||| || | ||||| || ||||||| Sbjct 11816 GCCAAACCCTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 11761 >seq4713 Length=17327 Score = 104 bits (114), Expect = 3e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 72759 || |||||| ||||||| ||| |||||| || ||| | | ||||||| ||| ||| Sbjct 15012 ATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAACT 15071 Query 72760 TCACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818 | | ||| ||||| |||||||| ||||||| ||| || ||||| |||||||||| Sbjct 15072 TG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACAGCTATCCTGGCGGCTAA 15130 Query 72819 AATGGCATAATCTGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCTGCTGCCAGAGTGT 72877 | || |||||||||||| || || ||| || || || |||| || |||| ||| Sbjct 15131 TGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGTTGT 15189 Query 72878 CCAATTCTACCGTTGTTACTCCATTATA 72905 | | ||| || |||||||| || || || Sbjct 15190 CTAGTTCAACGGTTGTTACACCTTTGTA 15217 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/120 (78%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||||| | |||||||||||| |||| || || |||||||| || |||||||| | Sbjct 2281 TACTTTGAGTTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 2340 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| || |||||||||||||||||||| || || || || ||||| |||| | ||||| Sbjct 2341 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATAG 2397 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 71404 TTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTC 71463 ||||||| ||||| ||||| || || || ||| |||||||||| ||||||||||| | | Sbjct 2605 TTTTCGGACAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTTTCGAAAATTTCC 2664 Query 71464 TTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 71523 || || | | ||||| | ||||| || || | | |||||||| || || Sbjct 2665 TTGTTCAATTGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGAATAAATGCATCG 2724 Query 71524 GCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGC 71579 || || |||||||| || || ||||| |||| || | ||||| || ||||||| Sbjct 2725 GCCAAACCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 2780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670614562098120