Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2525 114 1e-20 seq391 104 2e-17 seq4826 82.4 8e-11 seq4713 82.4 8e-11 >seq2525 Length=27391 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| | |||| ||| || |||||||| || |||||||||||||| ||| || Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 |||| | ||| | |||||||| || || ||||| | ||| | ||| ||||||||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| |||||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 143103 ||| || |||||| || || ||||| || || || ||||| ||||| ||||| Sbjct 2826 ACCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGT 2885 Query 143104 TTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 143163 ||| | | ||| | |||||||| |||||| ||||| | ||| | ||||||||||||||| Sbjct 2886 TTTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAA 2945 Query 143164 TGTTTTTACGAATATTTGCATA 143185 ||||| ||||| ||||||||| Sbjct 2946 AGTTTTCACGAAGATTTGCATA 2967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| || | |||| ||||||||||||||| || || || |||||||| |||||| Sbjct 4428 TACCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCG 4487 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | || | ||| || | || |||||||| | || | ||| ||||| |||| Sbjct 4488 TTTTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCA 4547 Query 143163 ATGTTTTTACGAATATTTGCATA 143185 | ||||| || || ||||||||| Sbjct 4548 ACGTTTTGACAAAAATTTGCATA 4570 >seq391 Length=62077 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| ||||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTC 24354 Query 143102 TGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 |||||| | | ||| | ||||| | ||||||||||| | || | ||||||||| || Sbjct 24353 -GTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| |||||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCAT 24271 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| |||||| |||||||||||| || || ||||||||||| || ||||||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTT 22737 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | |||||| | || || ||||| | || | || || || ||| Sbjct 22736 GTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTC 22677 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| || ||||| Sbjct 22676 AACGTTTTGACGAAAATCTGCAT 22654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| || | || | |||||| ||||| ||||||||||| |||||||| ||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | || | || || | ||||| ||||| | || | ||||||||| ||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| |||||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 143103 |||||| |||| | |||||||||||| || || |||||||||||||| |||||| Sbjct 23769 ACCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGT 23710 Query 143104 TTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 143163 || | | ||| | |||||||| ||||| ||||| | || | || || || |||| Sbjct 23709 CTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAG 23650 Query 143164 TGTTTTTACGAATATTTGCATA 143185 ||||| || || ||||||||| Sbjct 23649 CGTTTTGACAAAAATTTGCATA 23628 >seq4826 Length=16944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || || ||||| || ||||||| || || || ||||| |||||||||||| Sbjct 6821 GCCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGA 6880 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| | |||||||| || | || |||||||| ||||| ||||| Sbjct 6881 TAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGG 6940 Query 143077 TATGCCTT 143084 ||||||| Sbjct 6941 GATGCCTT 6948 >seq4713 Length=17327 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 156769 CAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAA 156828 ||||||| |||| || || | || |||| ||| | ||||| ||||| || ||||| Sbjct 2613 CAGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTTTCGAAAATTTCCTTGTTCAA 2672 Query 156829 TAGAACGGCAGCATCGC--TCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAA 156886 | |||| || | | ||| | ||||| | || || || |||||||||||||||| Sbjct 2673 TTGAACCGCTTCTTGTGAGTCAAA-AGGGTAT-CTCATCAGAATAAATGCATCGGCCAAA 2730 Query 156887 CCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttttt 156932 ||||||| || || |||||||| ||||| || |||| ||| ||| Sbjct 2731 CCTTGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTT 2776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506618060505840