Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2525 91.5 1e-13 seq391 84.2 2e-11 >seq2525 Length=27391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||| ||||| ||| || || ||||||||||| ||| ||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| |||| || || || || || ||||| || || ||||| || ||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| ||||||||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 || ||| |||||| ||| ||||| ||| || || |||||||| || || ||| || Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || || |||| |||||||| | ||| || || | ||||| ||||| || || || Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 15344 GTTTTTACAAAAATTTGCATATTTGAA 15370 ||||| |||||||||||||| || ||| Sbjct 5665 GTTTTCACAAAAATTTGCATGTTGGAA 5691 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 15254 GGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||||||||| || |||||| |||| ||| | || || || ||| || Sbjct 4123 GGAATTCCTTCTTTATCTTGAATTTTCGTCTTGACATTGTCGATAGTGTCGGACGGCTCG 4182 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct 4183 ACTTCCAACGTAATGGTTTTACCGGTCAGCGTTTTAACAAAAATTTGCAT 4232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 || ||| | ||||||||||| || ||| ||| || || |||||||| |||||| | Sbjct 4430 CCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCGTT 4489 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || || | || || |||||| ||||| || || || || ||||| || |||| Sbjct 4490 TTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAAC 4549 Query 15344 GTTTTTACAAAAATTTGCATA 15364 ||||| ||||||||||||||| Sbjct 4550 GTTTTGACAAAAATTTGCATA 4570 >seq391 Length=62077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 |||||| | || |||||||| || || |||||| ||||||||||| ||||| || Sbjct 23768 CCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTC 23709 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || || |||| || || || ||| || || | || || ||||| || ||||| Sbjct 23708 TTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGC 23649 Query 15344 GTTTTTACAAAAATTTGCATA 15364 ||||| ||||||||||||||| Sbjct 23648 GTTTTGACAAAAATTTGCATA 23628 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| |||| ||||||||||| || || || || |||||||| ||| || Sbjct 22510 TTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTTC 22451 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||||| | || ||||||||| ||| || || ||||| || || || || ||| Sbjct 22450 GTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGTC 22391 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | |||||| || ||||||||||| Sbjct 22390 AAAGTTTTGACGAAAATTTGCAT 22368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361903157992317