Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3755 141 8e-29 >seq3755 Length=20876 Score = 141 bits (156), Expect = 8e-29 Identities = 264/379 (70%), Gaps = 9/379 (2%) Strand=Plus/Minus Query 13156 AAAATCACAGTGCAATC-CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 ||| ||| | || | || | ||||| || ||| |||||||| || || | || | Sbjct 10546 AAATTCAAAATGAACTCACCTCATCCCTCGATATAAGCTCGTTACTGAACGTCAAGCCGG 10487 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| || || |||||||| | |||||| || | || || ||||||||| ||||| | Sbjct 10486 GCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCCGAAAAGAATATGC 10427 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATC 13333 |||| || || || || || | ||| | ||| || |||| | ||| || || | ||| Sbjct 10426 CTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAACGT-CGATTGTTTATCGGCAATC 10368 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || || ||||| | ||||| | || |||||| | | ||||||| || || || Sbjct 10367 CATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTTCTATAGCATTGAAA 10308 Query 13394 AAATAAtttttttCCTTACTG--TCTAAAATATAAGTATCTATCAATAAGCTATACATTT 13451 | || || |||||| || | || ||| || || || || | |||| |||||||| Sbjct 10307 AGATGATCTTTTTCG--ACGGGATCGCGAATGTAGGTTTCGATGAGTAAGGAATACATTT 10250 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | ||||| |||||||| || || ||||| || ||||||||||| | ||| || | || | Sbjct 10249 CGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACGAGCTTCCGTAACTT 10190 Query 13512 GAACTTC-GGAGTAAAATC 13529 | ||||| ||| |||||| Sbjct 10189 GCACTTCTTGAG-AAAATC 10172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||||||||| | || | | |||| || || |||||||| |||||||||||||| | Sbjct 11517 TTTTTGATATTCACCGACACGTCTTTCGAAGAAATTTGTTTTGCCTTCTAACGAAATGTG 11458 Query 12919 TTCCATAAAATCGAAAGGATT 12939 |||||||||||||| ||||| Sbjct 11457 CTCCATAAAATCGAAGGGATT 11437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430653918278874