Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3755 123 6e-23 seq391 114 3e-20 seq2525 102 2e-16 >seq3755 Length=20876 Score = 123 bits (136), Expect = 6e-23 Identities = 239/350 (68%), Gaps = 7/350 (2%) Strand=Plus/Plus Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 |||||| || || || | ||||| | |||||||| || || || || || || ||||| Sbjct 10179 TCAAGAAGTGCAAGTTACGGAAGCTCGTTGTTTTTATGGCTTTCAAATTGCAATCGAAAA 10238 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAA 269034 ||| ||||| || ||||| || | || || || || || ||| | |||||| Sbjct 10239 TATCCATTCCGAAATGTATTCCTTACTCATCGAAACCTACATTCGCGATCCCGTCGAAAA 10298 Query 269035 GAAAAGACTATTTTC--TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 | | | ||||| | |||| |||| | || || ||| ||| || ||||| Sbjct 10299 --AGATCATCTTTTCAATGCTATAGAAACTTTACCTTGCGTTCAAAAGAAAGCTCAATGG 10356 Query 269093 GCTCTGAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 ||| |||||||||| ||||| || | | ||| ||| | || || ||||| ||| Sbjct 10357 GCTTTGAAATGGATTGCCGATAAACAATCGACGTTCGGCGAACGTTTGGTGGCTTTCGCC 10416 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || ||||| |||||||||||||| ||| || | || |||||||| || ||| | Sbjct 10417 GCCGTCGAAGGCATATTCTTTTCGGGTAGTTTCGCGTCGATTTTTTGGTTAAAAAAACGG 10476 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGA 269259 ||||| ||||| || || || ||| |||||| | ||| ||||| || Sbjct 10477 GGCCTCATGCCCGGCTTGACGTTCAGTAACGAGCTTATATCGAGGGATGA 10526 >seq391 Length=62077 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| ||||| || | |||||||| ||||| ||||||||||||||||||||||| Sbjct 22189 TTACCAGCGAAAATCAGGCGTTGTTGATCTGGAGGGATTCCTTCTTTATCCTGAATCTTG 22130 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| ||||| || | ||||| || || ||||| || || |||||||| ||||| Sbjct 22129 GTTTTAACATTCTCAATCGTATCCGACGGCTCAACCTCAAGGGTGATAGTCTTGCCAGTC 22070 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || ||||| || ||||| Sbjct 22069 AAAGTCTTGACAAAAATTTGCAT 22047 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| | | |||||||| || ||||| ||||||||||| || ||||| Sbjct 21854 TTACCGGCAAAAATCAAGCGTTGTTGATCCGGCGGTATGCCTTCTTTATCTTGGATCTTG 21795 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | |||||| ||||| | |||||| || || ||||| | || ||||| || ||||| Sbjct 21794 GTTTTTACGTTTTCAATAGTATCGGACGGCTCGACCTCCAACGTGATAGTTTTCCCAGTC 21735 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | ||||| || || || ||||| Sbjct 21734 AAGGTTTTGACGAAAATTTGCAT 21712 >seq2525 Length=27391 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | ||||||||| || || || ||||||||||| || ||||| | Sbjct 5545 CCCGCGAATATCAGACGCTGTTGATCGGGCGGGATGCCTTCTTTATCTTGGATCTTGGTC 5604 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| |||||| ||||| || ||||| || || || || || Sbjct 5605 TTGACGTTTTCGATGGTATCCGAAGGTTCCACCTCAAGCGTAATTGTTTTGCCGGTGAGC 5664 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| || ||||| ||| Sbjct 5665 GTTTTCACAAAAATTTGCATGTTG 5688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| ||||| | ||||||||| || || |||||||||||||| ||||| || Sbjct 4090 TTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTTC 4149 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || ||| || || || || | ||||| || ||||| || Sbjct 4150 GTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGTC 4209 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 4210 AGCGTTTTAACAAAAATTTGCATT 4233 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | ||||||||| || || || |||||||| || |||||||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||||| ||||| | || || || || || |||| || || || || || || Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || |||||||| || || |||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCATT 3760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150475835915196