Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16762 95.1 6e-15 seq2194 93.3 2e-14 seq19017 91.5 8e-14 seq18410 87.8 9e-13 seq2860 87.8 9e-13 seq27345 84.2 1e-11 >seq16762 Length=4002 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| | |||||| | | |||||||||| | |||||| ||||||||||||| Sbjct 3674 AATAAAAAATAA---TGGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCAC 3730 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| |||||||||||||| ||||| Sbjct 3731 CACGCTCTAACCAACTGAGCTAAGAGGCCG 3760 >seq2194 Length=29827 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||| | | |||||||||| | |||||| ||||||||||||| ||||||| || Sbjct 15413 AAATTGGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCACCACGCTCTAAC 15354 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 15353 CAACTGAGCTAAGAGGCC 15336 >seq19017 Length=3215 Score = 91.5 bits (100), Expect = 8e-14 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||| | | |||||||||| | |||||| ||||||||||||| ||| Sbjct 1328 AAAAAT---ATTGGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCACCACG 1272 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 1271 CTCTAACCAACTGAGCTAAGAGGCC 1247 >seq18410 Length=3403 Score = 87.8 bits (96), Expect = 9e-13 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||| | | |||||||||| | |||||| ||||||||||||| || Sbjct 3378 AAAAAA--AACCTGGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCACCAC 3321 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 3320 GCTCTAACCAACTGAGCTAAGAGGCC 3295 >seq2860 Length=25373 Score = 87.8 bits (96), Expect = 9e-13 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| | |||||| ||||||||||||| ||||||| |||||| Sbjct 20417 TGGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 20476 Query 11516 TGAGCTAATGGGCCGTCG-ACGATTGTGATTT 11546 |||||||| |||| || ||| | ||| ||| Sbjct 20477 TGAGCTAAGAGGCCCACGAACGGTGGTGTTTT 20508 >seq27345 Length=2088 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || | |||| | | |||||||||| | |||||| ||||||||||||| | Sbjct 366 TAAAAAA--AACCTAGCCCCTAACAGGATCGAACTGTTGACCTTGGCGTTATTAGCACCA 423 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 424 CGCTCTAACCAACTGAGCTAAGAGGCC 450 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261291899333812