Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq391 107 2e-18 seq2525 95.1 1e-14 >seq391 Length=62077 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 |||||||| | |||||||||||| ||||| ||||||||||| | ||||||| ||||||| Sbjct 23762 AAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGATTTTTGTCTTGACG 23703 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||| | | ||||| || | ||| || |||||||| || || ||||| Sbjct 23702 TTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCAGCGTTTTG 23643 Query 94994 ACAAAGATCTGCAT 95007 ||||| || ||||| Sbjct 23642 ACAAAAATTTGCAT 23629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || | ||||||||| || ||||| |||||||| || | |||||||| |||||| Sbjct 22787 AAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAATTTTTGTTTTGACG 22728 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| ||||||| | || || || | |||||||||||| || || | ||||| Sbjct 22727 TTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGTCAACGTTTTG 22668 Query 94994 ACAAAGATCTGCATGC 95009 || || |||||||||| Sbjct 22667 ACGAAAATCTGCATGC 22652 >seq2525 Length=27391 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| | ||||| | | |||||||||||| || || ||||||||||| | ||| |||| | Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || ||| | | ||||||| | ||||| || | ||| || || ||||| || ||| Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 |||||||| || || ||||||| Sbjct 5374 GTTTTCACGAAAATTTGCATGC 5395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447940765165320