Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4826 105 6e-18 seq3755 89.7 5e-13 seq2525 89.7 5e-13 >seq4826 Length=16944 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||||||||| |||| ||| ||||| | ||||||||||||||||||||||||||| Sbjct 6821 GCCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGA 6880 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || | ||| || || ||| | |||| ||| || || |||||||| Sbjct 6881 TAGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGG 6940 Query 131127 GATTCCTT 131134 ||| |||| Sbjct 6941 GATGCCTT 6948 >seq3755 Length=20876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 |||| |||| ||| ||| ||||||| || || || || ||| | || ||||| || | Sbjct 10385 CGACGTTCGGCGAACGTTTGGTGGCTTTCGCCGCCGTCGAAGGCATATTCTTTTCGGGTA 10444 Query 46202 GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCA 46261 |||| || | || |||| | |||| |||| ||||||||||| ||||||| || | Sbjct 10445 GTTTCGCGTCGATTTTTTGGTTAAAAAAACGGGGCCTCATGCCCGGCTTGACGTTCAGTA 10504 Query 46262 ACGAGCTGATATCGCGCGACGAGG 46285 ||||||| |||||| | || |||| Sbjct 10505 ACGAGCTTATATCGAGGGATGAGG 10528 >seq2525 Length=27391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || || |||||| ||||| || ||||| || ||||||||||| || ||||| Sbjct 4089 CTTACCGGCAAAGATTAGGCGCTGTTGATCCGGCGGAATTCCTTCTTTATCTTGAATTTT 4148 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | ||||| | || | ||| |||| | ||||| || | |||| |||||||||||| Sbjct 4149 CGTCTTGACATTGTCGATAGTGTCGGACGGCTCGACTTCCAACGTAATGGTTTTACCGGT 4208 Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || ||||| ||||| Sbjct 4209 CAGCGTTTTAACAAAAATTTGCAT 4232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471643821694080