Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq365 125 5e-24 seq4826 116 2e-21 seq11937 105 4e-18 seq391 89.7 3e-13 seq2525 84.2 1e-11 seq1192 82.4 5e-11 >seq365 Length=63520 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 41430 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGCCTCGT 41489 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 41490 GGTCATATTTAGCCTTA 41506 Score = 105 bits (116), Expect = 4e-18 Identities = 72/81 (89%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 39091 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGA 39150 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 | |||| |||||||||||||| Sbjct 39151 TGATCCATTCATGCGCGTCAC 39171 >seq4826 Length=16944 Score = 116 bits (128), Expect = 2e-21 Identities = 102/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | ||| |||||||||||||||||||| |||||||||||| |||||||| || Sbjct 6822 CCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAT 6881 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | |||| |||| || || ||||| ||||| || ||||| ||||||||||| | ||| Sbjct 6882 AGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGGG 6941 Query 38211 ACGCCTT 38217 | ||||| Sbjct 6942 ATGCCTT 6948 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 |||||||| || ||||||| ||| ||||| | || |||||| ||| ||||| Sbjct 7234 CCTTCTTTATCTTGAATTTTTGTCTTGACATTTTCGATCGTATCTGACGGTTCGACTTCA 7293 Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | |||||||||||||||||||| ||||| ||||| |||||||| Sbjct 7294 AGGGTAATAGTTTTACCCGTCAAAGTTTTGACGAAAATCTGCAT 7337 >seq11937 Length=6370 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 568 CTCTCTCTTCAGAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTT 627 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||| ||| Sbjct 628 GCTAATATTTAGTCTT 643 >seq391 Length=62077 Score = 89.7 bits (98), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || | | ||||||||||| |||| ||||| ||||| |||||| Sbjct 17734 TTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTTA 17675 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | | || || | ||| |||||||| || || ||||| || ||| Sbjct 17674 GTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGTC 17615 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||||||||| |||||||| ||| Sbjct 17614 AACGTTTTCACGAAAATCTGCATATTT 17588 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 ||||| || || | ||| |||||||||| |||| || || || || |||||| Sbjct 21301 CCGGCGAAGATCAAGCGCTGTTGATCGGGCGGGATACCCTCCTTATCTTGAATTTTGGTT 21242 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 ||||| || | || |||||| ||||||||||| || || |||||||| ||||| Sbjct 21241 TTCACGTTTTCGATAGTATCAGACGGCTCAACTTCTAACGTGATGGTTTTACCGGTCAAA 21182 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||| ||||| || |||||| Sbjct 21181 GTTTTAACGAAGATTTGCATG 21161 >seq2525 Length=27391 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 ||||| || || || ||||| ||||| | |||| |||||||||||| ||| ||| | Sbjct 5254 CCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGAATCTTTGTC 5313 Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297 ||||| |||| | || || ||| ||||| || ||||| || || ||||| | Sbjct 5314 TTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTTCCCGTGAGA 5373 Query 38298 GTTTTCACGAATATCTGCATG 38318 ||||||||||| || |||||| Sbjct 5374 GTTTTCACGAAAATTTGCATG 5394 >seq1192 Length=40117 Score = 82.4 bits (90), Expect = 5e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || || ||||| |||||| | || || || || || || ||| ||||| || Sbjct 8405 CCGACAAAGTACTTCGGCTGCGAATTAGGTGCCCAAACTCAATTCGATTTGAAAAATGAT 8346 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | |||||||||||| || || | | || |||| ||| || | || || ||| Sbjct 8345 CGTTACATCGTTAACGGCGATCACGACGCCGTAAAATTGCAAGACCTATTGGATGGTTTT 8286 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 ||| ||||| || || |||| || |||||||| || |||||| Sbjct 8285 ATTAAAAAGTTCGTTCTATGTCAAGAGTGCGATAATCCTGAGACC 8241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334691913397247