Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3755 111 2e-19 seq4713 104 3e-17 seq6174 96.9 4e-15 >seq3755 Length=20876 Score = 111 bits (122), Expect = 2e-19 Identities = 226/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 ||||| | |||||||| ||||| || ||||| | |||||| || ||||| || || Sbjct 10499 AACGTCAAGCCGGGCATGAGGCCCCGTTTTTTTAACCAAAAAATCGACGCGAAACTACCC 10440 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 |||||||| || ||||| || || || || || | | | || || | || || | Sbjct 10439 GAAAAGAATATGCCTTCGACGGCGGCGAAAGCCACCAAACGTTCGCCGAA--CGTCGATT 10382 Query 32832 TCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | | ||||| || |||||| | || ||||||| || ||||| | || | Sbjct 10381 GTTTATCGGCAATCCATTTCAAAGCCCATTGAGCTTTCTTTTGAACGCAAGGTAAAGTTT 10322 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--A 32944 |||||||||| || |||| | |||||| ||| || || || || || | | Sbjct 10321 CTATAGCATTGAAAAGATGATCTTTTTCGACGGGATCGCGAATGTAGGTTTCGATGAGTA 10262 Query 32945 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCT 33004 | || ||||||||| ||||| || ||||| || || |||||||| || || || || | Sbjct 10261 AGGA--ATACATTTCGGAATGGATATTTTCGATTGCAATTTGAAAGCCATAAAAACAACG 10204 Query 33005 AGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33037 ||| || |||| || |||||| | ||||||| Sbjct 10203 AGCTTCCGTAACTTGCACTTCTTGAGAAAATCG 10171 >seq4713 Length=17327 Score = 104 bits (114), Expect = 3e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 63749 ATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACT 63808 || || ||| ||||||| ||| |||||| || ||| | | ||||||| ||| ||| Sbjct 15012 ATCATCGGACAATGTTTATTCGTTTGAGGATTTACCCAGTCGTACAAATCCTGCATAACT 15071 Query 63809 TCACTAAATAGtttt-tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 63867 | | ||| ||||| |||||||||||||||| ||| || ||||| || ||||||| Sbjct 15072 TG-CGAAAAGGTTTTCTTTGTTTCTTTGTGTAAATTACTGACAGCTATCCTGGCGGCTAA 15130 Query 63868 AATGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGT 63926 | || ||||| |||||| || || ||| || || || ||||||| |||| ||| Sbjct 15131 TGTTGCGTAATCTGGATGTATTGCAG-ACATCGTAGCAGCGGTTTCGGCAGCCAAGTTGT 15189 Query 63927 CCAATTCTACCGTTGTTACACCATTATA 63954 | | ||| || ||||||||||| || || Sbjct 15190 CTAGTTCAACGGTTGTTACACCTTTGTA 15217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||| | |||||||||||| |||| || || |||||||| || |||||||| | Sbjct 2281 TACTTTGAGTTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 2340 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62309 || || |||||||||||||||||||| || || || || ||||| |||| | |||| Sbjct 2341 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCAT---TGCCGCTAATA 2396 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62521 ||||| ||||| || || || || | |||||||| |||||||| || | ||| || | Sbjct 2614 AGTTCGCAACTAGCTTCCAAAGCTGCATAATAAATTGTTTCGAAAATTTCCTTGTTCAAT 2673 Query 62522 TCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 62581 | |||||| | ||||| || || | | |||||||| || || || || ||| Sbjct 2674 TGAACCGCTTCTTGTGAGTCAAAAGGGTATCTCATCAGAATAAATGCATCGGCCAAACCT 2733 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 62628 |||||||| || ||||| |||| ||| | ||||| || ||||||| Sbjct 2734 TGAACACCTATTCCGATGGGTCGATGACGTTTATTCGATCTTTCAGC 2780 >seq6174 Length=13620 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 |||||| |||||||||||||| |||| || || |||||||| || |||||||| | Sbjct 12260 TACTTGGAATTCTCCAGACAAAACTCGTCGCGTATAAATATTCGATGTGTACGGTTCGAA 12201 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 || || |||||||||||||||||||| || || || || ||||| || || Sbjct 12200 TGATTCGTTATTTCCCAAAATTTGAGCTGTCGACGCCGTAGGCATCGGCGC 12150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633136681945200