Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2525 104 2e-17 seq391 89.7 4e-13 >seq2525 Length=27391 Score = 104 bits (114), Expect = 2e-17 Identities = 114/147 (78%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || ||||||||||| |||| || | ||||| ||| |||| Sbjct 4233 AATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTC 4174 Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || || ||| | |||| ||| || |||||||| ||||| || || Sbjct 4173 CGACACTATCGA--CAATGTCAAGACGAAAATTCA-AGATAAAGAAGGAATTCCGCCGGA 4117 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAA 25141 |||||||| | || |||||||| || Sbjct 4116 TCAACAGCGCCTAATCTTTGCCGGTAA 4090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || ||||||| ||| | ||||| | ||||| ||| |||| Sbjct 3760 AATGCAAATTTTCGTAAAAACCCTGACCGGCAAAACGATCACTTTAGAAGTCGAGCCGTC 3701 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | ||| | || | ||| ||||||||||| || || || || | Sbjct 3700 GGACACGATCGAAAACGTAAAGACCAAGATTCAA-GACAAAGAAGGCATCCCGCCCGATC 3642 Query 25117 AACAGCGGATTATTTTTGCCGGCAA 25141 ||||||| | |||||||| || || Sbjct 3641 AACAGCGTTTGATTTTTGCTGGTAA 3617 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||| || | ||||| | ||||| || | || Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| |||| |||||| ||||| ||||| ||||| ||||| ||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| | || || ||||| Sbjct 2846 CAGCGATTGATCTTCGCCGG 2827 >seq391 Length=62077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||||||| ||||||| | ||||| ||| ||||| Sbjct 21162 ATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTCT 21221 Query 25059 GACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| || || | |||| ||| || || || || || || || || || Sbjct 21222 GATACTATCGAAAACGTGAAAACCAAAATTCA-AGATAAGGAGGGTATCCCGCCCGATCA 21280 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 |||||| | || || ||||| Sbjct 21281 ACAGCGCTTGATCTTCGCCGG 21301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432997730533655