Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq391 109 5e-19 seq4826 104 2e-17 seq2525 104 2e-17 >seq391 Length=62077 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| || || || ||| |||| | ||||||||| | || Sbjct 22368 ATGCAAATTTTCGTCAAAACTTTGACGGGCAAGACGATCACCTTGGAAGTGGAACCGTCC 22427 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || ||||||||||| ||||| || || || |||||| Sbjct 22428 GATACCATCGAGAACGTAAAAACGAAGATTCAAGACAAAGAGGGCATACCTCCGGATCAA 22487 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 |||||| | ||||| ||||| || Sbjct 22488 CAACGTTTAATATTCGCCGGTAA 22510 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||||||||| ||||||||||| |||| | ||||| || | | Sbjct 21162 ATGCAAATCTTCGTTAAAACTTTGACCGGTAAAACCATCACGTTAGAAGTTGAGCCGTCT 21221 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||| ||||||||||| || ||||||||| Sbjct 21222 GATACTATCGAAAACGTGAAAACCAAAATTCAAGATAAGGAGGGTATCCCGCCCGATCAA 21281 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || || ||||| Sbjct 21282 CAGCGCTTGATCTTCGCCGG 21301 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| ||||| || || ||| |||| | ||||| ||| | || Sbjct 24271 ATGCAAATTTTCGTCAAAACGTTAACGGGCAAGACGATCACGTTGGAAGTAGAACCGTCC 24330 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| |||||||| || ||||||||||| |||||| Sbjct 24331 GACACAATTGAAAATGTTAAAACGAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAA 24390 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||||| || || || || || || Sbjct 24391 CAACGGCTGATCTTCGCTGGTAA 24413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 |||| ||||| ||||| || ||||| || || || |||||| |||| | ||||| ||| Sbjct 17587 TAAATATGCAGATTTTCGTGAAAACGTTGACAGGAAAAACGATCACGTTAGAAGTCGAAC 17646 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | || | | || ||||||||||||||||| ||||| || |||| Sbjct 17647 CTTCGGACACGATTGAAAACGTGAAGACTAAAATTCAAGACAAGGAAGGTATCCCGCCCG 17706 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAA 22361 |||||||| | | || || ||||| || Sbjct 17707 ATCAACAAAGATTGATTTTCGCCGGTAA 17734 >seq4826 Length=16944 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || || || |||||||||||||| || || ||||| |||||||| || || || Sbjct 6946 GGCATCCCTCCGGATCAACAACGTCTAATTTTCGCCGGTAAACAGTTGGAAGACGGACGT 6887 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | |||||||||||||||||||| || || || | ||||| || |||||||||||| Sbjct 6886 ACGCTATCCGATTACAACATTCAAAAGGAGTCGACTCTTCATTTGGTGTTGCGATTGCGC 6827 Query 22441 GGAGG 22445 || || Sbjct 6826 GGTGG 6822 >seq2525 Length=27391 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || |||||| | || | ||||| || | || Sbjct 4569 ATGCAAATTTTTGTCAAAACGTTGACTGGCAAAACGATAACGTTGGAAGTAGAGCCGTCC 4510 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||| |||||||| ||||||||||| Sbjct 4509 GATACGATCGAGAACGTCAAAACGAAAATTCAAGACAAAGAGGGTATCCCACCCGATCAG 4450 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || || || || Sbjct 4449 CAACGTTTGATTTTCGCAGG 4430 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| | ||||||||||| | || | ||||| || | || Sbjct 4232 ATGCAAATTTTTGTTAAAACGCTGACCGGTAAAACCATTACGTTGGAAGTCGAGCCGTCC 4173 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| ||||||||||| || || || ||||| || |||||| Sbjct 4172 GACACTATCGACAATGTCAAGACGAAAATTCAAGATAAAGAAGGAATTCCGCCGGATCAA 4113 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || || || |||||||| || Sbjct 4112 CAGCGCCTAATCTTTGCCGGTAA 4090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| ||||| || ||| ||||| | ||||| ||| || | Sbjct 2966 ATGCAAATCTTCGTGAAAACTTTGACCGGCAAGACGATCACTTTAGAAGTTGAACCCTCG 2907 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||||| ||||||||||| || ||||| || |||||| Sbjct 2906 GACACGATCGAAAACGTGAAAACCAAAATCCAAGACAAGGAAGGAATTCCGCCTGATCAA 2847 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || || ||||| Sbjct 2846 CAGCGATTGATCTTCGCCGG 2827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| ||||| | ||||| ||||| | || ||||| |||||| | Sbjct 5687 AACATGCAAATTTTTGTGAAAACGCTCACCGGCAAAACAATTACGCTTGAGGTGGAACCT 5628 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | |||| || || ||||| || || || || || |||||| Sbjct 5627 TCGGATACCATCGAAAACGTCAAGACCAAGATCCAAGATAAAGAAGGCATCCCGCCCGAT 5568 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 ||||| ||||| ||||| || || Sbjct 5567 CAACAGCGTCTGATATTCGCGGG 5545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419408096041405