Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13053 95.1 2e-14 seq9217 84.2 4e-11 seq2000 84.2 4e-11 >seq13053 Length=5658 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 863 AGCCCGGTTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAATGTCGTGGGTTCGAG 804 Query 142563 CCCCACA 142569 ||||||| Sbjct 803 CCCCACA 797 >seq9217 Length=8895 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 142058 TGTGGCGCAATGGACA-GCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||| |||| | |||||||||||||||||||||||||| | |||||||| ||||| Sbjct 188 TGTGGCGCAGTGGATAAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATCCCCG 129 Query 142117 CCA 142119 ||| Sbjct 128 CCA 126 >seq2000 Length=31323 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 142058 TGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 ||||||||| |||| ||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 9484 TGTGGCGCAGTGGAATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGATCCCCG 9425 Query 142117 CCA 142119 ||| Sbjct 9424 CCA 9422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027013240303617