Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2525 125 1e-23 seq391 116 7e-21 >seq2525 Length=27391 Score = 125 bits (138), Expect = 1e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 ||| ||| |||||||| || || | ||| || || || || |||||||| ||||||||| Sbjct 5245 AACAGCTCACCGGCGAAGATAAGACGTTGCTGATCTGGCGGGATGCCTTCTTTGTCTTGA 5304 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||||| ||| ||| ||| || ||||| | || ||| |||||||| || || || ||| Sbjct 5305 ATCTTTGTCTTCACGTTCTCAATTGTGTCAGATGGTTCGACTTCCAACGTAATTGTCTTT 5364 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || ||||| || ||||| Sbjct 5365 CCCGTGAGAGTTTTCACGAAAATTTGCAT 5393 Score = 100 bits (110), Expect = 5e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 ||||| ||||| || |||||||| |||||||||||||| | ||| ||| ||||| ||| Sbjct 3638 TGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTGGTCTTTACGTTTTCGATCGTG 3697 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 || | | || ||||| || ||||| ||||| || || ||||| || ||||| || ||| Sbjct 3698 TCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTCAGGGTTTTTACGAAAATTTGC 3757 Query 68460 ATT 68462 ||| Sbjct 3758 ATT 3760 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | || ||||| || || ||||| |||||||||||||| || || | Sbjct 2827 CCGGCGAAGATCAATCGCTGTTGATCAGGCGGAATTCCTTCCTTGTCTTGGATTTTGGTT 2886 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||| ||||| | | ||| ||||| || ||||| || || || || | Sbjct 2887 TTCACGTTTTCGATCGTGTCCGAGGGTTCAACTTCTAAAGTGATCGTCTTGCCGGTCAAA 2946 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| Sbjct 2947 GTTTTCACGAAGATTTGCAT 2966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || | | ||| || |||||||| || || || ||||||||||| || | Sbjct 4430 CCTGCGAAAATCAAACGTTGCTGATCGGGTGGGATACCCTCTTTGTCTTGAATTTTCGTT 4489 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| |||||| || || | | ||||||||||| || || ||||| || || | Sbjct 4490 TTGACGTTCTCGATCGTATCGGACGGCTCTACTTCCAACGTTATCGTTTTGCCAGTCAAC 4549 Query 68442 GTCTTGACGAATATCTGCAT 68461 || ||||| || || ||||| Sbjct 4550 GTTTTGACAAAAATTTGCAT 4569 >seq391 Length=62077 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | ||||||||| ||||| || || ||||||||||||||||| || Sbjct 17735 CTTACCGGCGAAAATCAATCTTTGTTGATCGGGCGGGATACCTTCCTTGTCTTGAATTTT 17676 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| ||| || || ||||| | | ||| ||||| || ||||| |||||||| || Sbjct 17675 AGTCTTCACGTTTTCAATCGTGTCCGAAGGTTCGACTTCTAACGTGATCGTTTTTCCTGT 17616 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| |||||||| Sbjct 17615 CAACGTTTTCACGAAAATCTGCAT 17592 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||||||||| | | |||||| || || || ||||| || |||||||||||||| Sbjct 22511 CTTACCGGCGAATATTAAACGTTGTTGATCCGGAGGTATGCCCTCTTTGTCTTGAATCTT 22452 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || ||| ||||||||| || | | ||| |||||||||||||| || || ||||| Sbjct 22451 CGTTTTTACGTTCTCGATGGTATCGGACGGTTCCACTTCCAAGGTGATCGTCTTGCCCGT 22392 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| || ||||| Sbjct 22391 CAAAGTTTTGACGAAAATTTGCAT 22368 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| ||| || ||||| || | | ||| || || || ||||||||||| || || |||| Sbjct 22801 ACTTCTTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAA 22742 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | |||| |||||| ||||| ||||| | | || |||||||| ||||||||||| | Sbjct 22741 TTTTTGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCC 22682 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | || |||||||| |||||||| Sbjct 22681 CCGTCAACGTTTTGACGAAAATCTGCAT 22654 Score = 107 bits (118), Expect = 4e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 68310 TCTAACTGCTTC-CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| ||| || || ||||| || | | ||| || || |||||||||||||| ||||| Sbjct 23780 TCTAA-TGCCTCACCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTC 23722 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || || |||| ||||||| ||||| ||||| | | ||| ||||||| || || || Sbjct 23721 CTGGATTTTTGTCTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGT 23662 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| || || ||||| || || ||||| Sbjct 23661 TTTTCCCGTCAGCGTTTTGACAAAAATTTGCAT 23629 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || || | |||||| || |||||||| ||||| |||||||| || || Sbjct 24414 CTTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 24355 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | || || || || ||||| | | |||||||||||| ||||| || || ||||| Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 | || |||||||| || |||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCATT 24270 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| |||||||||||||| | || || ||||||||||| ||||| ||||| Sbjct 21160 CCACCGCGAAGACGCAATACCAAGTGCAAGGTCGATTCTTTTTGGATATTATAGTCGGAC 21101 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 | ||||| || |||||||| || || || Sbjct 21100 AATGTCCGACCGTCTTCTAATTGTTTACC 21072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920901956249640