Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Romanomermis_20culicivorax_20[genbank_20GCA_5F001039655.1_202014-01- 08] 62,537 sequences; 322,765,759 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2525 96.9 3e-15 seq1344 96.9 3e-15 seq391 91.5 1e-13 seq4826 86.0 5e-12 >seq2525 Length=27391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || | ||||||||| || || || |||||||||||||| |||||| Sbjct 3617 TTACCAGCAAAAATCAAACGCTGTTGATCGGGCGGGATGCCTTCTTTGTCTTGAATCTTG 3676 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 |||| | ||| | ||||| | | ||||| || | || | ||||||||||||| Sbjct 3677 GTCTTTACGTTTTCGATCGTGTCCGACGGCTCGACTTCTAAAGTGATCGTTTTGCCGGTC 3736 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 || |||||||| ||||| ||||| Sbjct 3737 AGGGTTTTTACGAAAATTTGCAT 3759 >seq1344 Length=37916 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/138 (76%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 114236 TTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAAT 114295 ||||||||||||| | |||||||| |||||| |||| || ||||||||||| || ||| Sbjct 29762 TTGTTTACCAGCGAAAATGAGACGTTGTTGGGCCGGCGGGATGCCTTCTTTTTCTTCAAC 29821 Query 114296 CTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCA---CGGTCACCGTTTT 114352 |||| ||||| | | ||||| |||| |||| ||||| |||| || | | ||| Sbjct 29822 TTTTTCTTTTATCCGCTCAACTTTGTCAGTGGGTTCGATATCCAATTCGATTTC---TTT 29878 Query 114353 GCCGGTCAGAGTTTTTAC 114370 |||||||| ||||| || Sbjct 29879 GCCGGTCAACGTTTTAAC 29896 >seq391 Length=62077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||||||| |||| || || ||||| || || ||||| ||||||||||| || ||| Sbjct 24413 TTACCAGCGAAGATCAGCCGTTGTTGATCTGGTGGAATACCTTCTTTGTCTTGGAT-TTT 24355 Query 114300 TGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 |||||| | | ||||| ||||||| | ||| || |||| || | ||| ||||| || Sbjct 24354 CGTTTTAACATTTTCAATTGTGTCGGACGGTTCTACTTCCAACGTGATCGTCTTGCCCGT 24295 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || ||||| ||||| Sbjct 24294 TAACGTTTTGACGAAAATTTGCAT 24271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 ||||||||| |||| | ||| || || ||||| |||||||||||||| || ||| ||| Sbjct 22796 TTACCAGCGAAGATCAAACGTTGCTGATCCGGCGGAATGCCTTCTTTATCCTGAAT-TTT 22738 Query 114300 TGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 |||||| | | ||| | ||||| | | || || |||| || | ||||| || || Sbjct 22737 TGTTTTGACGTTTTCGATCGTGTCAGACGGCTCCACTTCCAACGTGATGGTTTTCCCCGT 22678 Query 114359 CAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || |||||||||||| Sbjct 22677 CAACGTTTTGACGAAAATCTGCATG 22653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||||||| |||| | ||| || || || || ||||||||||||||||| || ||||| Sbjct 23769 ACCAGCGAAGATTAAACGTTGCTGATCTGGTGGAATGCCTTCTTTGTCCTGGAT-TTTTG 23711 Query 114302 T-TTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 | || | | ||| | ||||| | | |||||| |||| || | ||||| || |||| Sbjct 23710 TCTTGACGTTTTCGATCGTGTCCGACGGTTCGACTTCCAGCGTTATAGTTTTTCCCGTCA 23651 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 | ||||| |||||||| ||||| Sbjct 23650 GCGTTTTGACAAAAATTTGCAT 23629 >seq4826 Length=16944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || | || ||| || ||||| | || || || |||||||||||||||||| Sbjct 6822 CCACCGCGCAATCGCAACACCAAATGAAGAGTCGACTCCTTTTGAATGTTGTAATCGGAT 6881 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| ||||| | |||||||| ||| | || ||||| ||||| |||||||| Sbjct 6882 AGCGTACGTCCGTCTTCCAACTGTTTACCGGCGAAAATTAGACGTTGTTGATCCGGAGGG 6941 Query 114276 ATGCCTT 114282 ||||||| Sbjct 6942 ATGCCTT 6948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419814186295644